Hb_000025_400

Information

Type -
Description -
Location Contig25: 379829-381148
Sequence    

Annotation

kegg
ID vvi:100255166
description uncharacterized LOC100255166
nr
ID XP_011004240.1
description PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
swissprot
ID -
description -
trembl
ID F6HA38
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g03420 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_400 0.0 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
2 Hb_000465_260 0.1224699998 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
3 Hb_008468_030 0.1297081802 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000056_280 0.1338935849 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_002928_120 0.1385289002 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
6 Hb_005016_020 0.141313151 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
7 Hb_004631_110 0.1420103129 - - ring finger protein, putative [Ricinus communis]
8 Hb_012727_010 0.142780514 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_000000_110 0.1453326049 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
10 Hb_000540_040 0.1518253293 - - PREDICTED: chitinase 2 [Amborella trichopoda]
11 Hb_001832_210 0.1537982629 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
12 Hb_010253_020 0.1588347196 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_002928_180 0.1606369934 - - catalase CAT1 [Manihot esculenta]
14 Hb_048643_010 0.1614308619 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_001814_080 0.1621384953 - - PREDICTED: oleosin 1-like [Jatropha curcas]
16 Hb_000028_340 0.1632923474 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
17 Hb_005054_170 0.1635326626 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
18 Hb_000778_020 0.1666420715 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
19 Hb_003506_020 0.1682302191 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
20 Hb_002122_080 0.1685744938 - - -

Gene co-expression network

sample Hb_000025_400 Hb_000025_400 Hb_000465_260 Hb_000465_260 Hb_000025_400--Hb_000465_260 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000056_280 Hb_000056_280 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110 Hb_009646_010 Hb_009646_010 Hb_000465_260--Hb_009646_010 Hb_000465_260--Hb_000056_280 Hb_000465_260--Hb_004631_110 Hb_001818_060 Hb_001818_060 Hb_000465_260--Hb_001818_060 Hb_033363_010 Hb_033363_010 Hb_000465_260--Hb_033363_010 Hb_007576_200 Hb_007576_200 Hb_008468_030--Hb_007576_200 Hb_000120_230 Hb_000120_230 Hb_008468_030--Hb_000120_230 Hb_000649_120 Hb_000649_120 Hb_008468_030--Hb_000649_120 Hb_008468_030--Hb_000056_280 Hb_000028_340 Hb_000028_340 Hb_008468_030--Hb_000028_340 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_000056_280--Hb_009646_010 Hb_000056_280--Hb_033363_010 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_000000_110 Hb_000000_110 Hb_005016_020--Hb_000000_110 Hb_001898_020 Hb_001898_020 Hb_005016_020--Hb_001898_020 Hb_001178_080 Hb_001178_080 Hb_005016_020--Hb_001178_080 Hb_160405_010 Hb_160405_010 Hb_005016_020--Hb_160405_010 Hb_012727_010 Hb_012727_010 Hb_005016_020--Hb_012727_010 Hb_000220_080 Hb_000220_080 Hb_005016_020--Hb_000220_080 Hb_000840_070 Hb_000840_070 Hb_004631_110--Hb_000840_070 Hb_001195_350 Hb_001195_350 Hb_004631_110--Hb_001195_350 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94276 24.0422 4.18349 24.3059 1.56448 2.09943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21033 0.598601 2.71679 15.9369 5.75095

CAGE analysis