Hb_000025_410

Information

Type -
Description -
Location Contig25: 385060-387258
Sequence    

Annotation

kegg
ID tcc:TCM_040943
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
nr
ID XP_011024963.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
swissprot
ID Q9LFC5
description Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
trembl
ID A0A061GU23
description Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040943 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g01110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26108: 385844-386022 , PASA_asmbl_26109: 386463-386735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_410 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
2 Hb_001227_030 0.0614747969 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
3 Hb_008406_200 0.0625326559 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
4 Hb_002890_290 0.0664715677 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
5 Hb_005653_090 0.0666141369 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
6 Hb_000696_230 0.0699517 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
7 Hb_000403_050 0.0708301123 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_011537_050 0.0709104411 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
9 Hb_002784_020 0.0747758117 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
10 Hb_001329_160 0.0748017088 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
11 Hb_000334_280 0.0758830158 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
12 Hb_003878_070 0.0764127586 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
13 Hb_183612_040 0.0765233499 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
14 Hb_001225_040 0.0767433499 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
15 Hb_167498_010 0.0770734177 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_003370_030 0.0774021801 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
17 Hb_001486_160 0.0777182726 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
18 Hb_000484_030 0.0779614636 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
19 Hb_007054_060 0.0779707538 - - -
20 Hb_000922_360 0.0785762656 - - -

Gene co-expression network

sample Hb_000025_410 Hb_000025_410 Hb_001227_030 Hb_001227_030 Hb_000025_410--Hb_001227_030 Hb_008406_200 Hb_008406_200 Hb_000025_410--Hb_008406_200 Hb_002890_290 Hb_002890_290 Hb_000025_410--Hb_002890_290 Hb_005653_090 Hb_005653_090 Hb_000025_410--Hb_005653_090 Hb_000696_230 Hb_000696_230 Hb_000025_410--Hb_000696_230 Hb_000403_050 Hb_000403_050 Hb_000025_410--Hb_000403_050 Hb_005489_020 Hb_005489_020 Hb_001227_030--Hb_005489_020 Hb_001227_030--Hb_002890_290 Hb_005779_080 Hb_005779_080 Hb_001227_030--Hb_005779_080 Hb_152175_010 Hb_152175_010 Hb_001227_030--Hb_152175_010 Hb_004837_180 Hb_004837_180 Hb_001227_030--Hb_004837_180 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_002890_290--Hb_152175_010 Hb_003464_090 Hb_003464_090 Hb_002890_290--Hb_003464_090 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_005653_090--Hb_000331_680 Hb_005653_090--Hb_003464_090 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_000696_230--Hb_003464_090 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70715 2.3716 1.76989 1.38693 1.63101 2.263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93087 2.14304 1.55044 2.32674 1.76218

CAGE analysis