Hb_000025_440

Information

Type -
Description -
Location Contig25: 416673-417345
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07500g
description POPTRDRAFT_821361; ankyrin repeat family protein
nr
ID XP_011004217.1
description PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HNG0
description Ankyrin repeat family protein OS=Populus trichocarpa GN=POPTR_0009s07500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26121: 416031-438729
cDNA
(Sanger)
(ID:Location)		 028_K10.ab1: 416340-438729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_440 0.0 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
2 Hb_001017_080 0.2061226556 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
3 Hb_182005_010 0.2206684515 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
4 Hb_000239_110 0.221494353 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_156503_040 0.2243927079 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_001022_040 0.2304412085 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
7 Hb_000500_210 0.23478454 - - -
8 Hb_005714_050 0.2361535498 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
9 Hb_069022_010 0.2393543703 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001623_070 0.2499319559 - - cytochrome B5 isoform 1, putative [Ricinus communis]
11 Hb_000975_270 0.2501296955 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
12 Hb_011609_110 0.2525650794 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
13 Hb_001911_070 0.2628189921 - - -
14 Hb_004241_010 0.2657136046 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_032974_010 0.2701250895 - - -
16 Hb_117092_010 0.2705181165 - - acyl-CoA oxidase, putative [Ricinus communis]
17 Hb_005725_100 0.272262923 - - hypothetical protein 30 [Hevea brasiliensis]
18 Hb_123763_010 0.2788377073 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
19 Hb_000111_230 0.2790298145 - - -
20 Hb_003057_020 0.2795138116 - - 40S ribosomal protein S23, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_440 Hb_000025_440 Hb_001017_080 Hb_001017_080 Hb_000025_440--Hb_001017_080 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_156503_040 Hb_156503_040 Hb_000025_440--Hb_156503_040 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000500_210 Hb_000500_210 Hb_000025_440--Hb_000500_210 Hb_001017_080--Hb_156503_040 Hb_109578_010 Hb_109578_010 Hb_001017_080--Hb_109578_010 Hb_001017_080--Hb_000500_210 Hb_004931_010 Hb_004931_010 Hb_001017_080--Hb_004931_010 Hb_000975_270 Hb_000975_270 Hb_001017_080--Hb_000975_270 Hb_021924_010 Hb_021924_010 Hb_182005_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_182005_010--Hb_001488_400 Hb_182005_010--Hb_000500_210 Hb_000975_180 Hb_000975_180 Hb_182005_010--Hb_000975_180 Hb_005245_070 Hb_005245_070 Hb_182005_010--Hb_005245_070 Hb_033376_010 Hb_033376_010 Hb_182005_010--Hb_033376_010 Hb_003398_020 Hb_003398_020 Hb_000239_110--Hb_003398_020 Hb_005725_100 Hb_005725_100 Hb_000239_110--Hb_005725_100 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_003376_380 Hb_003376_380 Hb_000239_110--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_000239_110--Hb_004429_110 Hb_000239_110--Hb_000500_210 Hb_123763_010 Hb_123763_010 Hb_156503_040--Hb_123763_010 Hb_156503_040--Hb_182005_010 Hb_156503_040--Hb_109578_010 Hb_069022_010 Hb_069022_010 Hb_156503_040--Hb_069022_010 Hb_006816_400 Hb_006816_400 Hb_001022_040--Hb_006816_400 Hb_111347_010 Hb_111347_010 Hb_001022_040--Hb_111347_010 Hb_004241_010 Hb_004241_010 Hb_001022_040--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_001022_040--Hb_000414_150 Hb_007951_130 Hb_007951_130 Hb_001022_040--Hb_007951_130 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206861 0.298634 0.164485 0.569044 0.0696556 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.974519 2.42396 0 0.214796 0

CAGE analysis