Hb_000025_470

Information

Type -
Description -
Location Contig25: 444707-453509
Sequence    

Annotation

kegg
ID rcu:RCOM_0833830
description Minor histocompatibility antigen H13, putative
nr
ID XP_012065910.1
description PREDICTED: signal peptide peptidase [Jatropha curcas]
swissprot
ID O81062
description Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1
trembl
ID A0A067LFK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22822 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26125: 444766-453513 , PASA_asmbl_26126: 451804-453464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_470 0.0 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
2 Hb_002728_070 0.0455729451 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
3 Hb_008748_040 0.0606695654 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
4 Hb_054865_120 0.0619693722 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
5 Hb_011671_040 0.0685462836 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
6 Hb_000058_100 0.075245823 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
7 Hb_003688_130 0.0793024945 - - phosphoserine phosphatase, putative [Ricinus communis]
8 Hb_003125_160 0.0811894737 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_027472_150 0.0848347335 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
10 Hb_003813_130 0.0870568722 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
11 Hb_000260_170 0.0870612355 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
12 Hb_001946_010 0.087771025 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_000053_130 0.0887653082 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
14 Hb_000291_220 0.0891861224 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
15 Hb_004310_130 0.0895940666 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
16 Hb_003226_140 0.0903540572 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
17 Hb_000922_410 0.0913111465 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
18 Hb_028227_020 0.0922324805 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
19 Hb_009545_080 0.092436202 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
20 Hb_000212_330 0.0927344489 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_470 Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_000025_470--Hb_002728_070 Hb_008748_040 Hb_008748_040 Hb_000025_470--Hb_008748_040 Hb_054865_120 Hb_054865_120 Hb_000025_470--Hb_054865_120 Hb_011671_040 Hb_011671_040 Hb_000025_470--Hb_011671_040 Hb_000058_100 Hb_000058_100 Hb_000025_470--Hb_000058_100 Hb_003688_130 Hb_003688_130 Hb_000025_470--Hb_003688_130 Hb_002728_070--Hb_054865_120 Hb_002728_070--Hb_000058_100 Hb_000329_140 Hb_000329_140 Hb_002728_070--Hb_000329_140 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_008748_040--Hb_011671_040 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_011671_040--Hb_003688_130 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_000058_100--Hb_004310_130 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_003688_130--Hb_008748_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8887 15.8524 38.5963 44.5178 61.1982 62.3968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3997 49.1545 33.6885 47.108 33.9629

CAGE analysis