Hb_000025_480

Information

Type transcription factor
Description TF Family: HB
Location Contig25: 477088-484642
Sequence    

Annotation

kegg
ID rcu:RCOM_0834050
description hypothetical protein
nr
ID XP_012065911.1
description PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
swissprot
ID P34684
description Homeobox protein lin-39 OS=Caenorhabditis elegans GN=lin-39 PE=2 SV=1
trembl
ID A0A067LGJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22826 PE=4 SV=1
Gene Ontology
ID GO:0043565
description homeodomain-like superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26127: 477297-484788 , PASA_asmbl_26128: 481668-481924 , PASA_asmbl_26129: 477297-482844
cDNA
(Sanger)
(ID:Location)		 025_C11.ab1: 484568-484778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_480 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
2 Hb_002357_040 0.0744066622 - - latex-abundant protein [Hevea brasiliensis]
3 Hb_007760_030 0.0853365046 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
4 Hb_098993_010 0.0867576315 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
5 Hb_011174_070 0.0885714286 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
6 Hb_000538_210 0.092566529 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000110_160 0.0937684615 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000173_170 0.0949791114 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
9 Hb_004800_160 0.0950291763 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
10 Hb_001981_090 0.0965607969 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
11 Hb_000029_030 0.1004479935 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
12 Hb_010402_010 0.1046510945 - - BnaC06g23470D [Brassica napus]
13 Hb_000696_110 0.1052193851 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
14 Hb_000427_030 0.1057185445 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000805_090 0.1068355674 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
16 Hb_000387_080 0.1071125471 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
17 Hb_001140_200 0.1098281651 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
18 Hb_005357_150 0.1131205748 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_006551_010 0.1141501389 - - electron transporter, putative [Ricinus communis]
20 Hb_003497_030 0.1144874423 - - ADP-ribosylation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_480 Hb_000025_480 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_002357_040--Hb_000387_080 Hb_000173_170 Hb_000173_170 Hb_007760_030--Hb_000173_170 Hb_007152_020 Hb_007152_020 Hb_007760_030--Hb_007152_020 Hb_001842_070 Hb_001842_070 Hb_007760_030--Hb_001842_070 Hb_006693_030 Hb_006693_030 Hb_007760_030--Hb_006693_030 Hb_011224_080 Hb_011224_080 Hb_007760_030--Hb_011224_080 Hb_003297_030 Hb_003297_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_003057_120 Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_011174_070--Hb_000805_090 Hb_010402_010 Hb_010402_010 Hb_000538_210--Hb_010402_010 Hb_000538_210--Hb_000696_110 Hb_000538_210--Hb_000387_080 Hb_010174_120 Hb_010174_120 Hb_000538_210--Hb_010174_120 Hb_000029_030 Hb_000029_030 Hb_000538_210--Hb_000029_030 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000567_260 Hb_000567_260 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.4907 9.5725 9.23028 13.578 74.4096 91.3662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.2667 62.7038 135.172 24.5468 12.7957

CAGE analysis