Hb_000025_490

Information

Type -
Description -
Location Contig25: 485511-487620
Sequence    

Annotation

kegg
ID rcu:RCOM_0834190
description zinc finger protein, putative
nr
ID XP_012065948.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
swissprot
ID Q9VE61
description E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1
trembl
ID A0A067LFL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22827 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_490 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
2 Hb_008725_220 0.0734931014 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
3 Hb_002119_030 0.0807833561 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
4 Hb_000959_240 0.0880876364 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_001515_040 0.091407209 - - -
6 Hb_167186_010 0.0921860794 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_101437_010 0.0965466394 - - PREDICTED: protein P21-like [Jatropha curcas]
8 Hb_179363_010 0.1121494255 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000433_050 0.1133548839 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
10 Hb_005054_330 0.1155644804 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_020367_010 0.1155858647 - - hypothetical protein PRUPE_ppa004271mg [Prunus persica]
12 Hb_001405_250 0.1266222151 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
13 Hb_007858_020 0.1299697372 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
14 Hb_112703_010 0.1323321614 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
15 Hb_004032_220 0.1397970355 - - Calmodulin, putative [Ricinus communis]
16 Hb_008651_010 0.1404564544 - - cytochrome P450, putative [Ricinus communis]
17 Hb_032071_010 0.1421029627 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
18 Hb_074672_010 0.1430715965 - - receptor serine/threonine kinase, putative [Ricinus communis]
19 Hb_116352_010 0.1470334836 - - kinase, putative [Ricinus communis]
20 Hb_067028_010 0.1517648201 - - BnaC03g72040D [Brassica napus]

Gene co-expression network

sample Hb_000025_490 Hb_000025_490 Hb_008725_220 Hb_008725_220 Hb_000025_490--Hb_008725_220 Hb_002119_030 Hb_002119_030 Hb_000025_490--Hb_002119_030 Hb_000959_240 Hb_000959_240 Hb_000025_490--Hb_000959_240 Hb_001515_040 Hb_001515_040 Hb_000025_490--Hb_001515_040 Hb_167186_010 Hb_167186_010 Hb_000025_490--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000025_490--Hb_101437_010 Hb_008725_220--Hb_000959_240 Hb_005054_330 Hb_005054_330 Hb_008725_220--Hb_005054_330 Hb_008725_220--Hb_167186_010 Hb_008725_220--Hb_101437_010 Hb_008725_220--Hb_001515_040 Hb_067028_010 Hb_067028_010 Hb_002119_030--Hb_067028_010 Hb_002119_030--Hb_167186_010 Hb_002119_030--Hb_008725_220 Hb_002119_030--Hb_000959_240 Hb_002119_030--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_000959_240--Hb_007858_020 Hb_000959_240--Hb_005054_330 Hb_000959_240--Hb_167186_010 Hb_000959_240--Hb_101437_010 Hb_020367_010 Hb_020367_010 Hb_001515_040--Hb_020367_010 Hb_001515_040--Hb_101437_010 Hb_179363_010 Hb_179363_010 Hb_001515_040--Hb_179363_010 Hb_000433_050 Hb_000433_050 Hb_001515_040--Hb_000433_050 Hb_167186_010--Hb_005054_330 Hb_167186_010--Hb_007858_020 Hb_101437_010--Hb_020367_010 Hb_101437_010--Hb_000433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 22.5227 16.0259 1.89579 0.0284407 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.274415 0 0.177876 0.109887

CAGE analysis