Hb_000025_540

Information

Type -
Description -
Location Contig25: 519633-523129
Sequence    

Annotation

kegg
ID vvi:104879644
description uncharacterized LOC104879644
nr
ID XP_010651502.1
description PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
swissprot
ID Q8K4B2
description Interleukin-1 receptor-associated kinase 3 OS=Mus musculus GN=Irak3 PE=1 SV=2
trembl
ID M5WJ40
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017051mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like protein kinase at2g19210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26140: 520221-520455 , PASA_asmbl_26141: 520501-520642 , PASA_asmbl_26142: 521028-521304 , PASA_asmbl_26143: 521437-522447 , PASA_asmbl_26144: 522452-522582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_540 0.0 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
2 Hb_003994_080 0.087006791 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
3 Hb_002783_190 0.08787281 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
4 Hb_138585_030 0.0897390995 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_002627_040 0.0923511637 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_014497_010 0.0962009691 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
7 Hb_002687_160 0.1040864741 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
8 Hb_032631_070 0.1063269731 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_000414_080 0.1063802591 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
10 Hb_001390_100 0.1122518516 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
11 Hb_000116_250 0.1126337404 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
12 Hb_001865_100 0.1130763599 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
13 Hb_000579_040 0.1131473705 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
14 Hb_001411_130 0.114529096 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
15 Hb_009296_020 0.1150386324 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
16 Hb_003175_070 0.116556812 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
17 Hb_005000_080 0.1188047415 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
18 Hb_006829_060 0.1194536704 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_002374_450 0.1202543367 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
20 Hb_004837_210 0.1225163092 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000025_540 Hb_000025_540 Hb_003994_080 Hb_003994_080 Hb_000025_540--Hb_003994_080 Hb_002783_190 Hb_002783_190 Hb_000025_540--Hb_002783_190 Hb_138585_030 Hb_138585_030 Hb_000025_540--Hb_138585_030 Hb_002627_040 Hb_002627_040 Hb_000025_540--Hb_002627_040 Hb_014497_010 Hb_014497_010 Hb_000025_540--Hb_014497_010 Hb_002687_160 Hb_002687_160 Hb_000025_540--Hb_002687_160 Hb_003752_090 Hb_003752_090 Hb_003994_080--Hb_003752_090 Hb_005000_080 Hb_005000_080 Hb_003994_080--Hb_005000_080 Hb_001021_210 Hb_001021_210 Hb_003994_080--Hb_001021_210 Hb_003994_080--Hb_138585_030 Hb_010620_050 Hb_010620_050 Hb_003994_080--Hb_010620_050 Hb_002783_190--Hb_138585_030 Hb_002783_190--Hb_002627_040 Hb_001279_020 Hb_001279_020 Hb_002783_190--Hb_001279_020 Hb_001279_090 Hb_001279_090 Hb_002783_190--Hb_001279_090 Hb_000620_020 Hb_000620_020 Hb_002783_190--Hb_000620_020 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002627_040--Hb_002687_160 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_005074_040 Hb_005074_040 Hb_014497_010--Hb_005074_040 Hb_008025_010 Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_000689_050 Hb_000689_050 Hb_014497_010--Hb_000689_050 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130 Hb_006829_060 Hb_006829_060 Hb_002687_160--Hb_006829_060 Hb_000979_130 Hb_000979_130 Hb_002687_160--Hb_000979_130 Hb_002687_160--Hb_008725_270 Hb_002687_160--Hb_014497_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459562 0.910917 2.92454 2.10825 0.323059 0.522813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.323195 0.317905 0.898414 1.02954 2.95151

CAGE analysis