Hb_000025_550

Information

Type -
Description -
Location Contig25: 525078-525854
Sequence    

Annotation

kegg
ID rcu:RCOM_0833080
description hypothetical protein
nr
ID XP_002527040.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7TPD0
description Integrator complex subunit 3 OS=Mus musculus GN=Ints3 PE=2 SV=2
trembl
ID B9SM21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0833080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_550 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020248_010 0.278387529 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_000832_330 0.2809682179 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
4 Hb_009012_010 0.3169423473 - - -
5 Hb_000107_320 0.3278747137 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
6 Hb_000189_210 0.3336334028 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
7 Hb_001414_130 0.3460791173 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_008195_040 0.3475315506 - - hypothetical protein VITISV_033788 [Vitis vinifera]
9 Hb_005975_020 0.3513122848 - - -
10 Hb_001935_210 0.3549352463 - - -
11 Hb_006857_030 0.3598620832 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002417_030 0.3687123381 - - PREDICTED: purine permease 3-like [Jatropha curcas]
13 Hb_000457_040 0.3710459122 - - -
14 Hb_117240_010 0.3716053275 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
15 Hb_012500_010 0.3756822862 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_000608_210 0.3785796512 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
17 Hb_000589_400 0.37979795 - - ESC, putative [Ricinus communis]
18 Hb_000402_010 0.3803458538 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
19 Hb_001904_040 0.3814741395 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_054328_010 0.3837642672 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]

Gene co-expression network

sample Hb_000025_550 Hb_000025_550 Hb_020248_010 Hb_020248_010 Hb_000025_550--Hb_020248_010 Hb_000832_330 Hb_000832_330 Hb_000025_550--Hb_000832_330 Hb_009012_010 Hb_009012_010 Hb_000025_550--Hb_009012_010 Hb_000107_320 Hb_000107_320 Hb_000025_550--Hb_000107_320 Hb_000189_210 Hb_000189_210 Hb_000025_550--Hb_000189_210 Hb_001414_130 Hb_001414_130 Hb_000025_550--Hb_001414_130 Hb_131956_010 Hb_131956_010 Hb_020248_010--Hb_131956_010 Hb_015388_030 Hb_015388_030 Hb_020248_010--Hb_015388_030 Hb_154471_010 Hb_154471_010 Hb_020248_010--Hb_154471_010 Hb_022137_040 Hb_022137_040 Hb_020248_010--Hb_022137_040 Hb_020248_010--Hb_000189_210 Hb_003405_040 Hb_003405_040 Hb_000832_330--Hb_003405_040 Hb_001935_210 Hb_001935_210 Hb_000832_330--Hb_001935_210 Hb_000832_330--Hb_001414_130 Hb_018118_040 Hb_018118_040 Hb_000832_330--Hb_018118_040 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010 Hb_009012_010--Hb_000107_320 Hb_006452_130 Hb_006452_130 Hb_009012_010--Hb_006452_130 Hb_000402_010 Hb_000402_010 Hb_009012_010--Hb_000402_010 Hb_005975_020 Hb_005975_020 Hb_009012_010--Hb_005975_020 Hb_117240_010 Hb_117240_010 Hb_009012_010--Hb_117240_010 Hb_054328_010 Hb_054328_010 Hb_009012_010--Hb_054328_010 Hb_000107_320--Hb_005975_020 Hb_001999_190 Hb_001999_190 Hb_000107_320--Hb_001999_190 Hb_000908_010 Hb_000908_010 Hb_000107_320--Hb_000908_010 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_075449_020 Hb_075449_020 Hb_000189_210--Hb_075449_020 Hb_000836_120 Hb_000836_120 Hb_000189_210--Hb_000836_120 Hb_000218_030 Hb_000218_030 Hb_000189_210--Hb_000218_030 Hb_000139_200 Hb_000139_200 Hb_000189_210--Hb_000139_200 Hb_005565_010 Hb_005565_010 Hb_000189_210--Hb_005565_010 Hb_000243_380 Hb_000243_380 Hb_000189_210--Hb_000243_380 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_003311_050 Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_001414_130--Hb_018118_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213013 0.335508 0 0 0.0912651 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.17145 0 0.141079 0

CAGE analysis