Hb_000025_600

Information

Type -
Description -
Location Contig25: 566699-570507
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14700g
description ribosomal protein S17
nr
ID XP_012065830.1
description PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
swissprot
ID A7HM43
description 30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1
trembl
ID A0A067LQC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06532 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26148: 566705-570453 , PASA_asmbl_26149: 566705-570028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_600 0.0 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
2 Hb_000134_330 0.0615672282 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
3 Hb_002296_060 0.0656223094 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
4 Hb_001818_020 0.069112533 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
5 Hb_001268_140 0.0743282865 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005701_020 0.0822047745 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
7 Hb_001300_270 0.0827081755 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
8 Hb_089140_100 0.0839265012 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
9 Hb_009851_100 0.0853276612 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
10 Hb_000970_010 0.0866460711 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
11 Hb_001269_270 0.0869014619 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_001045_080 0.0874367878 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
13 Hb_007944_040 0.0880854152 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
14 Hb_007317_150 0.0882635804 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
15 Hb_008173_090 0.0883091271 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_012753_230 0.0885839814 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
17 Hb_004724_160 0.090072772 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
18 Hb_000798_030 0.0905328875 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
19 Hb_000526_150 0.0909545063 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
20 Hb_001257_080 0.0958861831 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000025_600 Hb_000025_600 Hb_000134_330 Hb_000134_330 Hb_000025_600--Hb_000134_330 Hb_002296_060 Hb_002296_060 Hb_000025_600--Hb_002296_060 Hb_001818_020 Hb_001818_020 Hb_000025_600--Hb_001818_020 Hb_001268_140 Hb_001268_140 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_001300_270 Hb_001300_270 Hb_000025_600--Hb_001300_270 Hb_000134_330--Hb_001268_140 Hb_000134_330--Hb_002296_060 Hb_000134_330--Hb_001300_270 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_002296_060--Hb_005701_020 Hb_002296_060--Hb_001818_020 Hb_000970_010 Hb_000970_010 Hb_002296_060--Hb_000970_010 Hb_002296_060--Hb_001300_270 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_001268_140--Hb_001300_270 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_011465_040 Hb_011465_040 Hb_005701_020--Hb_011465_040 Hb_005701_020--Hb_000134_330 Hb_000580_080 Hb_000580_080 Hb_005701_020--Hb_000580_080 Hb_005701_020--Hb_001818_020 Hb_001300_270--Hb_007944_040 Hb_001300_270--Hb_155764_020 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.224 15.5273 22.6129 15.6814 48.3404 32.9156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.4429 132.712 46.1864 28.1011 9.62985

CAGE analysis