Hb_000025_690

Information

Type -
Description -
Location Contig25: 649788-653064
Sequence    

Annotation

kegg
ID rcu:RCOM_1647480
description spliceosome associated protein, putative
nr
ID XP_002516394.1
description spliceosome associated protein, putative [Ricinus communis]
swissprot
ID Q09442
description Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2
trembl
ID B9RRM5
description Spliceosome associated protein, putative OS=Ricinus communis GN=RCOM_1647480 PE=4 SV=1
Gene Ontology
ID GO:0000166
description splicing factor 3b subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26164: 649781-653047
cDNA
(Sanger)
(ID:Location)		 016_O12.ab1: 650497-653047

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_690 0.0 - - spliceosome associated protein, putative [Ricinus communis]
2 Hb_183510_020 0.0572487597 - - coated vesicle membrane protein, putative [Ricinus communis]
3 Hb_001226_150 0.0753837046 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
4 Hb_005867_070 0.0764967715 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000665_120 0.0772437148 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
6 Hb_000174_170 0.0776768368 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
7 Hb_007765_100 0.0799500317 - - PREDICTED: helicase SKI2W [Jatropha curcas]
8 Hb_028960_020 0.0804406091 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
9 Hb_000006_040 0.0806686827 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_000134_270 0.0811018634 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
11 Hb_005000_170 0.0811747768 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
12 Hb_000563_420 0.0812222071 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
13 Hb_000329_370 0.0819407093 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
14 Hb_000510_360 0.0820747833 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
15 Hb_001430_080 0.0825056824 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
16 Hb_002805_190 0.084137242 - - spliceosome associated protein, putative [Ricinus communis]
17 Hb_002205_030 0.0841728529 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
18 Hb_002217_430 0.0846997392 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
19 Hb_000390_230 0.0849287037 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
20 Hb_002889_010 0.0851349452 - - ubx domain-containing, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_690 Hb_000025_690 Hb_183510_020 Hb_183510_020 Hb_000025_690--Hb_183510_020 Hb_001226_150 Hb_001226_150 Hb_000025_690--Hb_001226_150 Hb_005867_070 Hb_005867_070 Hb_000025_690--Hb_005867_070 Hb_000665_120 Hb_000665_120 Hb_000025_690--Hb_000665_120 Hb_000174_170 Hb_000174_170 Hb_000025_690--Hb_000174_170 Hb_007765_100 Hb_007765_100 Hb_000025_690--Hb_007765_100 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_000339_040 Hb_000339_040 Hb_001226_150--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_001226_150--Hb_007007_120 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_005867_070--Hb_000339_040 Hb_000665_120--Hb_007765_100 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_000864_030 Hb_000864_030 Hb_000174_170--Hb_000864_030 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000679_020 Hb_000679_020 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_000174_170--Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_007765_100--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4668 17.9883 21.2003 10.9105 18.2217 13.4498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6984 10.3694 11.3509 20.616 20.0083

CAGE analysis