Hb_000027_010

Information

Type -
Description -
Location Contig27: 16291-17179
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_010 0.0 - - -
2 Hb_006275_080 0.0687987112 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
3 Hb_011689_090 0.0768943087 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
4 Hb_000710_130 0.0785154379 - - metal ion binding protein, putative [Ricinus communis]
5 Hb_116679_010 0.0837240983 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
6 Hb_000186_090 0.0892144327 - - ACC oxidase 1 [Hevea brasiliensis]
7 Hb_006052_080 0.0905269844 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
8 Hb_103931_010 0.0910605423 - - -
9 Hb_002025_190 0.0941427404 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
10 Hb_000086_160 0.0943886979 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
11 Hb_000363_100 0.0944958341 - - -
12 Hb_001104_290 0.0960840975 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
13 Hb_029508_040 0.0991956306 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
14 Hb_170597_010 0.0993204635 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
15 Hb_074100_010 0.1001500158 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_001053_100 0.1009033993 - - DNA-damage-inducible protein f, putative [Ricinus communis]
17 Hb_000999_060 0.1076942215 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
18 Hb_007472_060 0.1103931039 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
19 Hb_181191_010 0.1112697148 - - kinase, putative [Ricinus communis]
20 Hb_002277_020 0.1120852418 - - Uncharacterized protein TCM_002409 [Theobroma cacao]

Gene co-expression network

sample Hb_000027_010 Hb_000027_010 Hb_006275_080 Hb_006275_080 Hb_000027_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_000027_010--Hb_011689_090 Hb_000710_130 Hb_000710_130 Hb_000027_010--Hb_000710_130 Hb_116679_010 Hb_116679_010 Hb_000027_010--Hb_116679_010 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080 Hb_006275_080--Hb_011689_090 Hb_006275_080--Hb_116679_010 Hb_170597_010 Hb_170597_010 Hb_006275_080--Hb_170597_010 Hb_006452_080 Hb_006452_080 Hb_006275_080--Hb_006452_080 Hb_006275_080--Hb_000710_130 Hb_011689_090--Hb_116679_010 Hb_011689_090--Hb_170597_010 Hb_011689_090--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_011689_090--Hb_003607_040 Hb_000710_130--Hb_000186_090 Hb_029508_040 Hb_029508_040 Hb_000710_130--Hb_029508_040 Hb_000710_130--Hb_170597_010 Hb_002277_020 Hb_002277_020 Hb_000710_130--Hb_002277_020 Hb_116679_010--Hb_170597_010 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_000186_090--Hb_029508_040 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_074100_010 Hb_074100_010 Hb_000186_090--Hb_074100_010 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_000035_510 Hb_000035_510 Hb_006052_080--Hb_000035_510 Hb_005463_120 Hb_005463_120 Hb_006052_080--Hb_005463_120 Hb_008727_090 Hb_008727_090 Hb_006052_080--Hb_008727_090 Hb_181191_010 Hb_181191_010 Hb_006052_080--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_006052_080--Hb_000203_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.215592 13.3111 5.55189 131.604 0.514111 0.143046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.39365 1.11923

CAGE analysis