Hb_000027_030

Information

Type -
Description -
Location Contig27: 18689-20599
Sequence    

Annotation

kegg
ID tcc:TCM_009524
description Uncharacterized protein isoform 1
nr
ID XP_007044238.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E4X2
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_009524 PE=4 SV=1
Gene Ontology
ID GO:0005886
description coproporphyrinogen-iii aerobic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_030 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_001675_070 0.1102441837 - - eukaryotic translation elongation factor, putative [Ricinus communis]
3 Hb_022250_110 0.1114564521 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
4 Hb_000213_070 0.1176896361 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
5 Hb_001976_090 0.1179535797 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
6 Hb_000108_080 0.1196844302 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_000209_070 0.1217557597 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
8 Hb_001901_080 0.1232572622 - - PREDICTED: xylose isomerase [Jatropha curcas]
9 Hb_010180_040 0.1297137281 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
10 Hb_002070_070 0.1303477774 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004974_010 0.1308261598 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
12 Hb_001221_150 0.1325864465 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
13 Hb_006882_010 0.1326835218 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
14 Hb_006132_100 0.1327323615 - - PREDICTED: uncharacterized protein LOC105642968 [Jatropha curcas]
15 Hb_000029_320 0.1333648415 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_006114_020 0.1356771998 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000329_490 0.1362350426 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
18 Hb_000181_250 0.1370172662 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
19 Hb_000376_090 0.13799118 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
20 Hb_078477_040 0.1389549172 - - nuclear movement protein nudc, putative [Ricinus communis]

Gene co-expression network

sample Hb_000027_030 Hb_000027_030 Hb_001675_070 Hb_001675_070 Hb_000027_030--Hb_001675_070 Hb_022250_110 Hb_022250_110 Hb_000027_030--Hb_022250_110 Hb_000213_070 Hb_000213_070 Hb_000027_030--Hb_000213_070 Hb_001976_090 Hb_001976_090 Hb_000027_030--Hb_001976_090 Hb_000108_080 Hb_000108_080 Hb_000027_030--Hb_000108_080 Hb_000209_070 Hb_000209_070 Hb_000027_030--Hb_000209_070 Hb_001675_070--Hb_000209_070 Hb_001541_080 Hb_001541_080 Hb_001675_070--Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_001675_070--Hb_001143_110 Hb_003464_020 Hb_003464_020 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_022250_110--Hb_000209_070 Hb_000029_320 Hb_000029_320 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_001278_060 Hb_001278_060 Hb_000213_070--Hb_001278_060 Hb_000213_070--Hb_006002_030 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_007668_020 Hb_007668_020 Hb_000213_070--Hb_007668_020 Hb_000213_070--Hb_078477_040 Hb_010180_040 Hb_010180_040 Hb_001976_090--Hb_010180_040 Hb_000331_160 Hb_000331_160 Hb_001976_090--Hb_000331_160 Hb_005494_020 Hb_005494_020 Hb_001976_090--Hb_005494_020 Hb_080313_010 Hb_080313_010 Hb_001976_090--Hb_080313_010 Hb_000376_090 Hb_000376_090 Hb_001976_090--Hb_000376_090 Hb_176152_010 Hb_176152_010 Hb_001976_090--Hb_176152_010 Hb_031069_020 Hb_031069_020 Hb_000108_080--Hb_031069_020 Hb_003236_010 Hb_003236_010 Hb_000108_080--Hb_003236_010 Hb_004037_030 Hb_004037_030 Hb_000108_080--Hb_004037_030 Hb_000640_200 Hb_000640_200 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_000108_080--Hb_022250_110 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_000209_070--Hb_000029_320 Hb_000209_070--Hb_003464_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.016 67.6593 17.6185 83.3043 189.115 171.896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.8993 20.6868 24.2923 94.3204 30.1404

CAGE analysis