Hb_000027_040

Information

Type -
Description -
Location Contig27: 30866-33001
Sequence    

Annotation

kegg
ID rcu:RCOM_1311120
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative
nr
ID XP_012075776.1
description PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
swissprot
ID P49865
description Protein NtpR OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258) GN=ntpR PE=3 SV=2
trembl
ID A0A067KT63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09322 PE=4 SV=1
Gene Ontology
ID GO:0016787
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28110: 31861-32080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_040 0.0 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
2 Hb_000329_270 0.1385708476 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
3 Hb_048476_100 0.1603185589 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
4 Hb_000340_500 0.1675395179 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
5 Hb_032717_020 0.170879401 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
6 Hb_000258_250 0.1851843395 - - Origin recognition complex subunit, putative [Ricinus communis]
7 Hb_006671_010 0.1854896242 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
8 Hb_001097_020 0.1909818515 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
9 Hb_000261_080 0.1974734051 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
10 Hb_110390_010 0.2008480446 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
11 Hb_189216_030 0.2009909477 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
12 Hb_003849_130 0.2011316743 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
13 Hb_001040_110 0.2014730072 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
14 Hb_000200_200 0.2025148556 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
15 Hb_011609_020 0.2119485333 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000805_250 0.2122235434 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
17 Hb_004884_160 0.2132003503 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
18 Hb_055062_020 0.2141626225 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
19 Hb_000962_050 0.215119395 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
20 Hb_002374_080 0.2159035737 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_040 Hb_000027_040 Hb_000329_270 Hb_000329_270 Hb_000027_040--Hb_000329_270 Hb_048476_100 Hb_048476_100 Hb_000027_040--Hb_048476_100 Hb_000340_500 Hb_000340_500 Hb_000027_040--Hb_000340_500 Hb_032717_020 Hb_032717_020 Hb_000027_040--Hb_032717_020 Hb_000258_250 Hb_000258_250 Hb_000027_040--Hb_000258_250 Hb_006671_010 Hb_006671_010 Hb_000027_040--Hb_006671_010 Hb_000329_270--Hb_048476_100 Hb_003849_130 Hb_003849_130 Hb_000329_270--Hb_003849_130 Hb_055062_020 Hb_055062_020 Hb_000329_270--Hb_055062_020 Hb_000329_270--Hb_000258_250 Hb_000803_200 Hb_000803_200 Hb_000329_270--Hb_000803_200 Hb_048476_100--Hb_032717_020 Hb_048476_100--Hb_003849_130 Hb_048476_100--Hb_000803_200 Hb_048476_100--Hb_055062_020 Hb_002374_080 Hb_002374_080 Hb_048476_100--Hb_002374_080 Hb_002081_030 Hb_002081_030 Hb_000340_500--Hb_002081_030 Hb_000809_060 Hb_000809_060 Hb_000340_500--Hb_000809_060 Hb_000340_500--Hb_000258_250 Hb_002686_180 Hb_002686_180 Hb_000340_500--Hb_002686_180 Hb_024074_010 Hb_024074_010 Hb_000340_500--Hb_024074_010 Hb_001726_040 Hb_001726_040 Hb_000340_500--Hb_001726_040 Hb_032717_020--Hb_002686_180 Hb_032717_020--Hb_000329_270 Hb_000184_210 Hb_000184_210 Hb_032717_020--Hb_000184_210 Hb_032717_020--Hb_003849_130 Hb_032717_020--Hb_000340_500 Hb_000189_240 Hb_000189_240 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_000356_090 Hb_000356_090 Hb_000258_250--Hb_000356_090 Hb_011609_020 Hb_011609_020 Hb_000258_250--Hb_011609_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_006671_010--Hb_002374_080 Hb_000175_340 Hb_000175_340 Hb_006671_010--Hb_000175_340 Hb_000676_390 Hb_000676_390 Hb_006671_010--Hb_000676_390 Hb_006671_010--Hb_000258_250 Hb_006671_010--Hb_011609_020 Hb_026889_030 Hb_026889_030 Hb_006671_010--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.456503 0.0134244 2.73913 0.953619 0.84834 0.639783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3263 3.36954 2.49529 0.813399 0.0603692

CAGE analysis