Hb_000027_060

Information

Type -
Description -
Location Contig27: 49937-64443
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07470g
description hypothetical protein
nr
ID XP_006384126.1
description hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID U5GEI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07470g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28117: 56463-57219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_060 0.0 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
2 Hb_001534_150 0.0667669711 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
3 Hb_000331_710 0.0777769539 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_013720_010 0.085449425 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
5 Hb_000705_130 0.0896496859 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008040_060 0.101406993 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
7 Hb_003914_050 0.1022979295 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
8 Hb_006698_020 0.1134760105 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
9 Hb_004945_050 0.117629433 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
10 Hb_000247_150 0.1198511579 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
11 Hb_000522_130 0.1201315368 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
12 Hb_002890_320 0.1210112267 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
13 Hb_007102_010 0.1217198573 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
14 Hb_107552_020 0.1230387621 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
15 Hb_001677_120 0.1251065896 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_004880_100 0.1264156469 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
17 Hb_002529_080 0.1302713026 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
18 Hb_015882_020 0.1303305265 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
19 Hb_008550_030 0.1304046941 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
20 Hb_030370_070 0.1333491355 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000027_060 Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_000027_060--Hb_001534_150 Hb_000331_710 Hb_000331_710 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000705_130 Hb_000705_130 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050 Hb_030370_070 Hb_030370_070 Hb_001534_150--Hb_030370_070 Hb_107552_020 Hb_107552_020 Hb_001534_150--Hb_107552_020 Hb_001534_150--Hb_000705_130 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_000331_710--Hb_013720_010 Hb_000247_150 Hb_000247_150 Hb_000331_710--Hb_000247_150 Hb_000331_710--Hb_000705_130 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_006698_020 Hb_006698_020 Hb_000331_710--Hb_006698_020 Hb_013720_010--Hb_006698_020 Hb_013720_010--Hb_000247_150 Hb_001104_270 Hb_001104_270 Hb_013720_010--Hb_001104_270 Hb_008667_030 Hb_008667_030 Hb_013720_010--Hb_008667_030 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000705_130--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_003914_050 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008040_060--Hb_008667_030 Hb_003914_050--Hb_002529_080 Hb_000094_010 Hb_000094_010 Hb_003914_050--Hb_000094_010 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0257695 2.93729 0.762707 0.630253 0 0.00411023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.399019 0.665828

CAGE analysis