Hb_000027_130

Information

Type -
Description -
Location Contig27: 225866-232990
Sequence    

Annotation

kegg
ID rcu:RCOM_1310550
description wall-associated kinase, putative (EC:2.7.10.2)
nr
ID XP_012075736.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID A0A067KRX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09328 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g18390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28126: 225438-226440 , PASA_asmbl_28128: 229623-229817 , PASA_asmbl_28129: 229870-230138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_130 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
2 Hb_000771_070 0.0717595158 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
3 Hb_000752_020 0.0880960299 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
4 Hb_005814_010 0.1197752568 - - ATP binding protein, putative [Ricinus communis]
5 Hb_025236_020 0.1289856453 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
6 Hb_000402_030 0.1290442395 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_002910_010 0.1339838661 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
8 Hb_002343_020 0.1373679889 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
9 Hb_003905_040 0.1439174065 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
10 Hb_005375_070 0.1443191149 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
11 Hb_003529_230 0.1465810803 transcription factor TF Family: ERF -
12 Hb_000473_080 0.1476486567 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
13 Hb_001898_010 0.1499802921 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_001538_050 0.1520987064 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
15 Hb_004032_090 0.1523784296 - - PREDICTED: protein AIG1 [Jatropha curcas]
16 Hb_009476_110 0.1527396592 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
17 Hb_012098_180 0.1532830499 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
18 Hb_005080_020 0.1541373263 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_000495_050 0.1564901025 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
20 Hb_000086_620 0.1569606592 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000027_130 Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_000027_130--Hb_000771_070 Hb_000752_020 Hb_000752_020 Hb_000027_130--Hb_000752_020 Hb_005814_010 Hb_005814_010 Hb_000027_130--Hb_005814_010 Hb_025236_020 Hb_025236_020 Hb_000027_130--Hb_025236_020 Hb_000402_030 Hb_000402_030 Hb_000027_130--Hb_000402_030 Hb_002910_010 Hb_002910_010 Hb_000027_130--Hb_002910_010 Hb_000771_070--Hb_000752_020 Hb_000771_070--Hb_005814_010 Hb_003529_230 Hb_003529_230 Hb_000771_070--Hb_003529_230 Hb_000771_070--Hb_000402_030 Hb_000771_070--Hb_025236_020 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_000752_020--Hb_003529_230 Hb_000252_080 Hb_000252_080 Hb_000752_020--Hb_000252_080 Hb_000752_020--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_005814_010--Hb_000402_030 Hb_052434_010 Hb_052434_010 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_002343_020 Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_025236_020--Hb_005814_010 Hb_025236_020--Hb_052434_010 Hb_025236_020--Hb_003529_230 Hb_000402_030--Hb_002343_020 Hb_005375_070 Hb_005375_070 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_000649_300 Hb_000649_300 Hb_002910_010--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002910_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_002910_010--Hb_008103_100 Hb_002910_010--Hb_000771_070 Hb_002073_020 Hb_002073_020 Hb_002910_010--Hb_002073_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.371667 14.3774 8.0428 2.63248 0.1857 0.225287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.489922 0.729398 0.419161 4.13085 3.36209

CAGE analysis