Hb_000027_150

Information

Type -
Description -
Location Contig27: 238337-243957
Sequence    

Annotation

kegg
ID rcu:RCOM_1310510
description mitochondrial carrier protein, putative
nr
ID XP_002527012.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID Q8RWA5
description Nicotinamide adenine dinucleotide transporter 2, mitochondrial OS=Arabidopsis thaliana GN=NDT2 PE=1 SV=1
trembl
ID B9SLZ3
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_1310510 PE=3 SV=1
Gene Ontology
ID GO:0055085
description nicotinamide adenine dinucleotide transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28133: 238443-243914 , PASA_asmbl_28134: 238450-243847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_150 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_050806_010 0.0801785634 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
3 Hb_001687_040 0.0875810963 - - actin-depolymerizing factor [Hevea brasiliensis]
4 Hb_000012_100 0.0907171289 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
5 Hb_006573_220 0.094161456 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_000181_300 0.0960181335 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
7 Hb_004449_200 0.0986517521 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
8 Hb_001191_090 0.098710211 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_002234_070 0.1026202455 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
10 Hb_006569_100 0.10321853 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
11 Hb_007926_060 0.1042986965 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
12 Hb_003581_150 0.1043503616 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
13 Hb_001396_100 0.1075968511 - - DNA binding protein, putative [Ricinus communis]
14 Hb_020419_020 0.1080092812 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_002431_050 0.1080853855 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
16 Hb_001633_030 0.1081028017 - - -
17 Hb_002631_020 0.108463753 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
18 Hb_000123_170 0.1097511435 - - Rab3 [Hevea brasiliensis]
19 Hb_000103_320 0.1099456339 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_001882_070 0.1102598374 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_150 Hb_000027_150 Hb_050806_010 Hb_050806_010 Hb_000027_150--Hb_050806_010 Hb_001687_040 Hb_001687_040 Hb_000027_150--Hb_001687_040 Hb_000012_100 Hb_000012_100 Hb_000027_150--Hb_000012_100 Hb_006573_220 Hb_006573_220 Hb_000027_150--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_000027_150--Hb_000181_300 Hb_004449_200 Hb_004449_200 Hb_000027_150--Hb_004449_200 Hb_029904_040 Hb_029904_040 Hb_050806_010--Hb_029904_040 Hb_152910_020 Hb_152910_020 Hb_050806_010--Hb_152910_020 Hb_005663_120 Hb_005663_120 Hb_050806_010--Hb_005663_120 Hb_007192_100 Hb_007192_100 Hb_050806_010--Hb_007192_100 Hb_005527_040 Hb_005527_040 Hb_050806_010--Hb_005527_040 Hb_001687_040--Hb_006573_220 Hb_002097_060 Hb_002097_060 Hb_001687_040--Hb_002097_060 Hb_001191_090 Hb_001191_090 Hb_001687_040--Hb_001191_090 Hb_000069_100 Hb_000069_100 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_003053_030 Hb_003053_030 Hb_001687_040--Hb_003053_030 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_000012_100--Hb_006573_220 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000181_300--Hb_000193_120 Hb_000181_300--Hb_003053_030 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_000122_020 Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_002631_020 Hb_002631_020 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.109 10.672 16.8182 27.5967 11.597 18.3593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.4409 69.1929 53.1963 10.6074 11.9445

CAGE analysis