Hb_000027_160

Information

Type -
Description -
Location Contig27: 251852-257641
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13130g
description hypothetical protein
nr
ID XP_012082143.1
description PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
swissprot
ID Q9M9C6
description Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1
trembl
ID A0A067JZP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18372 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28136: 251892-257304 , PASA_asmbl_28137: 252354-253632 , PASA_asmbl_28138: 252744-252894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_160 0.0 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
2 Hb_000349_250 0.075684372 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
3 Hb_024714_090 0.0898758176 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
4 Hb_002053_180 0.0976027584 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_001571_080 0.1022502193 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
6 Hb_000086_470 0.1072018638 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
7 Hb_000905_100 0.1106400387 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
8 Hb_001307_020 0.112589345 - - electron carrier, putative [Ricinus communis]
9 Hb_007237_020 0.1147073499 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
10 Hb_001085_160 0.1157297816 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
11 Hb_071674_010 0.1159128472 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
12 Hb_000120_340 0.1168131977 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_019973_010 0.1200074734 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
14 Hb_001269_060 0.120933674 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
15 Hb_004223_080 0.1211480741 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_004202_030 0.1212277622 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
17 Hb_000907_140 0.1220490939 - - PREDICTED: annexin D5-like [Jatropha curcas]
18 Hb_004308_030 0.1278541791 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
19 Hb_121313_010 0.1279201146 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
20 Hb_000956_050 0.1285963602 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_160 Hb_000027_160 Hb_000349_250 Hb_000349_250 Hb_000027_160--Hb_000349_250 Hb_024714_090 Hb_024714_090 Hb_000027_160--Hb_024714_090 Hb_002053_180 Hb_002053_180 Hb_000027_160--Hb_002053_180 Hb_001571_080 Hb_001571_080 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000905_100 Hb_000905_100 Hb_000027_160--Hb_000905_100 Hb_019973_010 Hb_019973_010 Hb_000349_250--Hb_019973_010 Hb_000349_250--Hb_002053_180 Hb_071674_010 Hb_071674_010 Hb_000349_250--Hb_071674_010 Hb_004223_080 Hb_004223_080 Hb_000349_250--Hb_004223_080 Hb_000349_250--Hb_001571_080 Hb_001085_160 Hb_001085_160 Hb_024714_090--Hb_001085_160 Hb_000213_020 Hb_000213_020 Hb_024714_090--Hb_000213_020 Hb_024714_090--Hb_001571_080 Hb_001633_160 Hb_001633_160 Hb_024714_090--Hb_001633_160 Hb_002203_010 Hb_002203_010 Hb_024714_090--Hb_002203_010 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_000627_040 Hb_000627_040 Hb_002053_180--Hb_000627_040 Hb_007237_020 Hb_007237_020 Hb_002053_180--Hb_007237_020 Hb_006922_020 Hb_006922_020 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002490_060 Hb_002490_060 Hb_002053_180--Hb_002490_060 Hb_005568_140 Hb_005568_140 Hb_001571_080--Hb_005568_140 Hb_001571_080--Hb_001085_160 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_000086_470--Hb_007237_020 Hb_000120_340 Hb_000120_340 Hb_000086_470--Hb_000120_340 Hb_004202_030 Hb_004202_030 Hb_000086_470--Hb_004202_030 Hb_007313_030 Hb_007313_030 Hb_000086_470--Hb_007313_030 Hb_007632_160 Hb_007632_160 Hb_000086_470--Hb_007632_160 Hb_000086_470--Hb_000627_040 Hb_000905_100--Hb_000836_090 Hb_000809_130 Hb_000809_130 Hb_000905_100--Hb_000809_130 Hb_000002_370 Hb_000002_370 Hb_000905_100--Hb_000002_370 Hb_000905_100--Hb_002053_180 Hb_033006_020 Hb_033006_020 Hb_000905_100--Hb_033006_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0631526 3.42637 19.9064 10.1063 0.0132411 0.0187053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.248111 0.244052 0.0932691 1.11844 4.83685

CAGE analysis