Hb_000027_180

Information

Type -
Description -
Location Contig27: 271935-277702
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13160g
description POPTRDRAFT_769621; hypothetical protein
nr
ID XP_012082131.1
description PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HWF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13160g PE=4 SV=2
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28140: 272094-273532 , PASA_asmbl_28141: 273812-274061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_180 0.0 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
2 Hb_005332_140 0.1418430595 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
3 Hb_000139_180 0.158749091 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
4 Hb_000015_160 0.1611520384 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
5 Hb_143766_030 0.1622084341 - - protein with unknown function [Ricinus communis]
6 Hb_007313_070 0.1641648295 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
7 Hb_001474_050 0.172821755 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
8 Hb_000103_420 0.177116742 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
9 Hb_003605_220 0.1810316496 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
10 Hb_000402_090 0.1853467396 - - Lipase [Glycine soja]
11 Hb_000991_050 0.1854661213 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
12 Hb_004994_300 0.1854857527 - - synaptotagmin, putative [Ricinus communis]
13 Hb_048755_020 0.190784186 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
14 Hb_000753_140 0.192804549 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
15 Hb_000170_160 0.1930009048 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
16 Hb_003177_070 0.1943103037 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
17 Hb_000460_060 0.198448057 - - importin beta-1, putative [Ricinus communis]
18 Hb_001911_010 0.1997765672 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_001437_010 0.2001651899 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
20 Hb_121089_020 0.2013918362 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_180 Hb_000027_180 Hb_005332_140 Hb_005332_140 Hb_000027_180--Hb_005332_140 Hb_000139_180 Hb_000139_180 Hb_000027_180--Hb_000139_180 Hb_000015_160 Hb_000015_160 Hb_000027_180--Hb_000015_160 Hb_143766_030 Hb_143766_030 Hb_000027_180--Hb_143766_030 Hb_007313_070 Hb_007313_070 Hb_000027_180--Hb_007313_070 Hb_001474_050 Hb_001474_050 Hb_000027_180--Hb_001474_050 Hb_003581_280 Hb_003581_280 Hb_005332_140--Hb_003581_280 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_001102_090 Hb_001102_090 Hb_005332_140--Hb_001102_090 Hb_005332_140--Hb_001474_050 Hb_002281_010 Hb_002281_010 Hb_005332_140--Hb_002281_010 Hb_002900_120 Hb_002900_120 Hb_005332_140--Hb_002900_120 Hb_000671_060 Hb_000671_060 Hb_000139_180--Hb_000671_060 Hb_020805_100 Hb_020805_100 Hb_000139_180--Hb_020805_100 Hb_012038_010 Hb_012038_010 Hb_000139_180--Hb_012038_010 Hb_000732_070 Hb_000732_070 Hb_000139_180--Hb_000732_070 Hb_001911_010 Hb_001911_010 Hb_000139_180--Hb_001911_010 Hb_000334_130 Hb_000334_130 Hb_000139_180--Hb_000334_130 Hb_000991_050 Hb_000991_050 Hb_000015_160--Hb_000991_050 Hb_012753_040 Hb_012753_040 Hb_000015_160--Hb_012753_040 Hb_002387_070 Hb_002387_070 Hb_000015_160--Hb_002387_070 Hb_002774_150 Hb_002774_150 Hb_000015_160--Hb_002774_150 Hb_009674_080 Hb_009674_080 Hb_000015_160--Hb_009674_080 Hb_000631_140 Hb_000631_140 Hb_000015_160--Hb_000631_140 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000200_170 Hb_000200_170 Hb_143766_030--Hb_000200_170 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_004994_300 Hb_004994_300 Hb_007313_070--Hb_004994_300 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_172421_010 Hb_172421_010 Hb_007313_070--Hb_172421_010 Hb_007313_070--Hb_002248_120 Hb_001898_130 Hb_001898_130 Hb_001474_050--Hb_001898_130 Hb_001474_050--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_001474_050--Hb_003849_190 Hb_001102_200 Hb_001102_200 Hb_001474_050--Hb_001102_200 Hb_001474_050--Hb_143766_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0696633 1.83891 0.779696 0.825751 0.580678 0.0755798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0965144 0.151888 0.404662 0.199164 0.870028

CAGE analysis