Hb_000027_200

Information

Type -
Description -
Location Contig27: 306728-314919
Sequence    

Annotation

kegg
ID rcu:RCOM_1309840
description zinc finger protein, putative
nr
ID XP_012082125.1
description PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18365 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28144: 311059-311217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_200 0.0 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
2 Hb_005854_040 0.0559610771 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002687_200 0.0724268983 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015884_020 0.0756271963 - - PREDICTED: protein PIR [Jatropha curcas]
5 Hb_021977_010 0.0810351108 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
6 Hb_001159_060 0.0821257422 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
7 Hb_000976_110 0.0832601618 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
8 Hb_003490_060 0.0850616665 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
9 Hb_001141_240 0.0864083824 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
10 Hb_005694_060 0.087174948 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
11 Hb_001811_170 0.0874975428 - - dynamin, putative [Ricinus communis]
12 Hb_001507_050 0.0892448895 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001504_060 0.0892894262 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
14 Hb_002301_030 0.0896930205 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
15 Hb_003777_030 0.0896964494 - - Exocyst complex component, putative [Ricinus communis]
16 Hb_000173_130 0.0904120035 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
17 Hb_002639_030 0.0913915902 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
18 Hb_001226_130 0.0927796869 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_001117_110 0.0928480568 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_000342_050 0.0939503685 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]

Gene co-expression network

sample Hb_000027_200 Hb_000027_200 Hb_005854_040 Hb_005854_040 Hb_000027_200--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_000027_200--Hb_002687_200 Hb_015884_020 Hb_015884_020 Hb_000027_200--Hb_015884_020 Hb_021977_010 Hb_021977_010 Hb_000027_200--Hb_021977_010 Hb_001159_060 Hb_001159_060 Hb_000027_200--Hb_001159_060 Hb_000976_110 Hb_000976_110 Hb_000027_200--Hb_000976_110 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_005854_040--Hb_002687_200 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_005854_040--Hb_015884_020 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_001414_010 Hb_001414_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_000406_210 Hb_000406_210 Hb_001159_060--Hb_000406_210 Hb_000815_300 Hb_000815_300 Hb_001159_060--Hb_000815_300 Hb_000862_100 Hb_000862_100 Hb_001159_060--Hb_000862_100 Hb_000172_360 Hb_000172_360 Hb_001159_060--Hb_000172_360 Hb_005305_130 Hb_005305_130 Hb_001159_060--Hb_005305_130 Hb_009158_060 Hb_009158_060 Hb_001159_060--Hb_009158_060 Hb_011674_040 Hb_011674_040 Hb_000976_110--Hb_011674_040 Hb_000109_260 Hb_000109_260 Hb_000976_110--Hb_000109_260 Hb_000009_030 Hb_000009_030 Hb_000976_110--Hb_000009_030 Hb_003490_060 Hb_003490_060 Hb_000976_110--Hb_003490_060 Hb_000318_150 Hb_000318_150 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04827 2.99462 4.24741 4.92159 1.21979 1.84644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.904932 1.48666 1.16927 4.21893 5.003

CAGE analysis