Hb_000027_230

Information

Type -
Description -
Location Contig27: 330158-345359
Sequence    

Annotation

kegg
ID rcu:RCOM_1309820
description serine/threonine kinase, putative (EC:2.7.11.22)
nr
ID XP_012082165.1
description PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
swissprot
ID Q39203
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1
trembl
ID A0A067K316
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18364 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28146: 344232-344387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_230 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
2 Hb_116784_020 0.1001330484 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_000574_340 0.1211479234 - - hypothetical protein RCOM_0901420 [Ricinus communis]
4 Hb_005092_090 0.1227193425 - - cold regulated protein [Manihot esculenta]
5 Hb_001345_040 0.1236165982 - - hypothetical protein VITISV_015004 [Vitis vinifera]
6 Hb_067472_010 0.1293700613 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
7 Hb_000352_060 0.1301644221 - - RNA-directed DNA polymerase [Arachis hypogaea]
8 Hb_001836_010 0.1337341191 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
9 Hb_006588_020 0.1339651635 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
10 Hb_004994_200 0.135349129 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
11 Hb_012796_030 0.135662526 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
12 Hb_001514_150 0.1368930212 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_188075_010 0.1403434935 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
14 Hb_000009_390 0.1408736109 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
15 Hb_001468_040 0.1412612435 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
16 Hb_002983_090 0.1452815233 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
17 Hb_002818_070 0.1459759864 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_003440_080 0.1488918105 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_007035_010 0.1494111325 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
20 Hb_000060_130 0.1496002567 - - -

Gene co-expression network

sample Hb_000027_230 Hb_000027_230 Hb_116784_020 Hb_116784_020 Hb_000027_230--Hb_116784_020 Hb_000574_340 Hb_000574_340 Hb_000027_230--Hb_000574_340 Hb_005092_090 Hb_005092_090 Hb_000027_230--Hb_005092_090 Hb_001345_040 Hb_001345_040 Hb_000027_230--Hb_001345_040 Hb_067472_010 Hb_067472_010 Hb_000027_230--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_000027_230--Hb_000352_060 Hb_116784_020--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_116784_020--Hb_001366_260 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000820_100 Hb_000820_100 Hb_116784_020--Hb_000820_100 Hb_003440_080 Hb_003440_080 Hb_000574_340--Hb_003440_080 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_012796_030 Hb_012796_030 Hb_000574_340--Hb_012796_030 Hb_027337_130 Hb_027337_130 Hb_000574_340--Hb_027337_130 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_005092_090--Hb_001345_040 Hb_005092_090--Hb_116784_020 Hb_005092_090--Hb_001366_260 Hb_005092_090--Hb_012796_030 Hb_001345_040--Hb_006588_020 Hb_001345_040--Hb_188075_010 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_067472_010--Hb_001366_260 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_011649_030 Hb_011649_030 Hb_000352_060--Hb_011649_030 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_000352_060--Hb_067472_010 Hb_000352_060--Hb_001468_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.236192 0.110217 0.118792 0.0227723 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123745 0.557761

CAGE analysis