Hb_000027_270

Information

Type -
Description -
Location Contig27: 395045-395754
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13230g
description POPTRDRAFT_566598; zinc finger family protein
nr
ID XP_012082123.1
description PREDICTED: zinc finger protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18362 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28151: 394962-395822
cDNA
(Sanger)
(ID:Location)		 031_B08.ab1: 394962-395629 , 044_P05.ab1: 394962-395670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_270 0.0 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
2 Hb_000700_090 0.1020071552 - - protein with unknown function [Ricinus communis]
3 Hb_003494_240 0.1024541633 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
4 Hb_005488_070 0.1030207427 - - putative cytochrome P450 [Oryza sativa Japonica Group]
5 Hb_000078_130 0.1058596333 - - -
6 Hb_001454_060 0.1070594263 - - uncharacterized protein LOC100527252 [Glycine max]
7 Hb_127979_010 0.1081953827 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
8 Hb_006816_360 0.1083651846 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
9 Hb_000976_010 0.1093890313 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
10 Hb_003581_140 0.1096861476 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
11 Hb_000172_400 0.1111825244 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_001902_050 0.1117417409 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
13 Hb_019613_020 0.1120632561 - - phospholipase C, putative [Ricinus communis]
14 Hb_000608_120 0.1132329026 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
15 Hb_035524_030 0.113883188 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003638_030 0.1162256346 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
17 Hb_001633_110 0.116752223 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
18 Hb_002207_100 0.1169212076 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
19 Hb_002377_050 0.1169319583 - - Agmatine deiminase, putative [Ricinus communis]
20 Hb_010261_020 0.1186709104 - - hypothetical protein JCGZ_17258 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_270 Hb_000027_270 Hb_000700_090 Hb_000700_090 Hb_000027_270--Hb_000700_090 Hb_003494_240 Hb_003494_240 Hb_000027_270--Hb_003494_240 Hb_005488_070 Hb_005488_070 Hb_000027_270--Hb_005488_070 Hb_000078_130 Hb_000078_130 Hb_000027_270--Hb_000078_130 Hb_001454_060 Hb_001454_060 Hb_000027_270--Hb_001454_060 Hb_127979_010 Hb_127979_010 Hb_000027_270--Hb_127979_010 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_003494_240--Hb_001454_060 Hb_000608_120 Hb_000608_120 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_000208_240 Hb_000208_240 Hb_005488_070--Hb_000208_240 Hb_003656_030 Hb_003656_030 Hb_005488_070--Hb_003656_030 Hb_019613_020 Hb_019613_020 Hb_005488_070--Hb_019613_020 Hb_009510_030 Hb_009510_030 Hb_005488_070--Hb_009510_030 Hb_035524_030 Hb_035524_030 Hb_005488_070--Hb_035524_030 Hb_003627_020 Hb_003627_020 Hb_005488_070--Hb_003627_020 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_001454_060--Hb_000608_120 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_000057_060 Hb_000057_060 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5031 4.38163 0.356554 2.30777 17.3817 23.7227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3726 7.74909 14.4114 6.00276 0.443112

CAGE analysis