Hb_000028_040

Information

Type -
Description -
Location Contig28: 71582-75722
Sequence    

Annotation

kegg
ID pmum:103338692
description prostaglandin E synthase 2-like
nr
ID XP_012088558.1
description PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
swissprot
ID Q7ZUC7
description Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1
trembl
ID A0A067JVB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27100 PE=4 SV=1
Gene Ontology
ID GO:0005623
description prostaglandin e synthase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29170: 71626-75727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_040 0.0 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
2 Hb_004512_020 0.1209338922 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
3 Hb_003656_110 0.1284316181 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_002872_020 0.13217173 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_011344_010 0.1417340717 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
6 Hb_001427_170 0.1422984899 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
7 Hb_000352_110 0.1427557896 - - DNA topoisomerase II, putative [Ricinus communis]
8 Hb_132835_010 0.1429603772 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
9 Hb_007304_110 0.1465736595 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_028227_030 0.1476752524 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
11 Hb_001959_050 0.1496187207 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
12 Hb_001136_100 0.151247917 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
13 Hb_011004_020 0.1519274281 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
14 Hb_000363_460 0.1544898286 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000330_050 0.1563074378 - - Protein yrdA, putative [Ricinus communis]
16 Hb_021443_070 0.156986199 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
17 Hb_011457_160 0.1595746579 - - PREDICTED: BI1-like protein [Jatropha curcas]
18 Hb_011485_040 0.1612143492 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL3 [Jatropha curcas]
19 Hb_003788_050 0.1613438612 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
20 Hb_001136_090 0.1617405274 - - Protein PNS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_040 Hb_000028_040 Hb_004512_020 Hb_004512_020 Hb_000028_040--Hb_004512_020 Hb_003656_110 Hb_003656_110 Hb_000028_040--Hb_003656_110 Hb_002872_020 Hb_002872_020 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000352_110 Hb_000352_110 Hb_000028_040--Hb_000352_110 Hb_004512_020--Hb_001427_170 Hb_012132_030 Hb_012132_030 Hb_004512_020--Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_004512_020--Hb_000946_120 Hb_031527_100 Hb_031527_100 Hb_004512_020--Hb_031527_100 Hb_000365_140 Hb_000365_140 Hb_004512_020--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_004512_020--Hb_000422_140 Hb_032202_170 Hb_032202_170 Hb_003656_110--Hb_032202_170 Hb_003097_190 Hb_003097_190 Hb_003656_110--Hb_003097_190 Hb_003656_110--Hb_004512_020 Hb_011457_160 Hb_011457_160 Hb_003656_110--Hb_011457_160 Hb_002890_180 Hb_002890_180 Hb_003656_110--Hb_002890_180 Hb_000429_200 Hb_000429_200 Hb_002872_020--Hb_000429_200 Hb_001136_100 Hb_001136_100 Hb_002872_020--Hb_001136_100 Hb_055590_010 Hb_055590_010 Hb_002872_020--Hb_055590_010 Hb_003506_080 Hb_003506_080 Hb_002872_020--Hb_003506_080 Hb_000599_110 Hb_000599_110 Hb_002872_020--Hb_000599_110 Hb_001136_090 Hb_001136_090 Hb_002872_020--Hb_001136_090 Hb_011344_010--Hb_001427_170 Hb_001341_040 Hb_001341_040 Hb_011344_010--Hb_001341_040 Hb_001040_170 Hb_001040_170 Hb_011344_010--Hb_001040_170 Hb_002997_100 Hb_002997_100 Hb_011344_010--Hb_002997_100 Hb_001057_010 Hb_001057_010 Hb_011344_010--Hb_001057_010 Hb_000733_060 Hb_000733_060 Hb_011344_010--Hb_000733_060 Hb_182026_010 Hb_182026_010 Hb_001427_170--Hb_182026_010 Hb_005928_060 Hb_005928_060 Hb_001427_170--Hb_005928_060 Hb_001427_170--Hb_012132_030 Hb_017168_010 Hb_017168_010 Hb_001427_170--Hb_017168_010 Hb_002973_080 Hb_002973_080 Hb_000352_110--Hb_002973_080 Hb_001629_110 Hb_001629_110 Hb_000352_110--Hb_001629_110 Hb_000330_050 Hb_000330_050 Hb_000352_110--Hb_000330_050 Hb_007575_040 Hb_007575_040 Hb_000352_110--Hb_007575_040 Hb_000172_370 Hb_000172_370 Hb_000352_110--Hb_000172_370 Hb_010638_020 Hb_010638_020 Hb_000352_110--Hb_010638_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.454 6.90347 8.23594 7.10002 63.629 18.9384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.445 25.8939 23.3673 12.5821 14.3257

CAGE analysis