Hb_000028_050

Information

Type -
Description -
Location Contig28: 76475-78952
Sequence    

Annotation

kegg
ID rcu:RCOM_0566090
description aldose-1-epimerase, putative (EC:5.1.3.3)
nr
ID XP_002530475.1
description aldose-1-epimerase, putative [Ricinus communis]
swissprot
ID Q9GKX6
description Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
trembl
ID B9SWV6
description Aldose 1-epimerase OS=Ricinus communis GN=RCOM_0566090 PE=3 SV=1
Gene Ontology
ID GO:0005829
description aldose 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29171: 76475-78891
cDNA
(Sanger)
(ID:Location)		 044_N08.ab1: 76953-78848

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_050 0.0 - - aldose-1-epimerase, putative [Ricinus communis]
2 Hb_003352_050 0.0968159348 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
3 Hb_000186_010 0.1002186287 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
4 Hb_000085_280 0.1009184439 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
5 Hb_003050_040 0.1027618541 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
6 Hb_013479_020 0.1031675517 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_000085_340 0.1031830797 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
8 Hb_002955_030 0.1048553878 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011537_040 0.1072245774 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
10 Hb_003055_050 0.1118206215 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
11 Hb_000176_110 0.1158539897 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
12 Hb_003453_010 0.1172627522 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004724_430 0.1192895346 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
14 Hb_023988_020 0.1193965132 - - PREDICTED: transmembrane protein 19 [Prunus mume]
15 Hb_002942_030 0.1210081192 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
16 Hb_002851_060 0.1222487792 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
17 Hb_005754_020 0.1244660919 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
18 Hb_019654_070 0.1254176386 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
19 Hb_000172_120 0.1255096001 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
20 Hb_000684_180 0.1261476875 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_050 Hb_000028_050 Hb_003352_050 Hb_003352_050 Hb_000028_050--Hb_003352_050 Hb_000186_010 Hb_000186_010 Hb_000028_050--Hb_000186_010 Hb_000085_280 Hb_000085_280 Hb_000028_050--Hb_000085_280 Hb_003050_040 Hb_003050_040 Hb_000028_050--Hb_003050_040 Hb_013479_020 Hb_013479_020 Hb_000028_050--Hb_013479_020 Hb_000085_340 Hb_000085_340 Hb_000028_050--Hb_000085_340 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_000186_010--Hb_000085_280 Hb_000042_230 Hb_000042_230 Hb_000186_010--Hb_000042_230 Hb_005288_120 Hb_005288_120 Hb_000186_010--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_000186_010--Hb_013405_130 Hb_001252_170 Hb_001252_170 Hb_000186_010--Hb_001252_170 Hb_035524_030 Hb_035524_030 Hb_000085_280--Hb_035524_030 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_000085_280--Hb_013405_130 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_033491_010 Hb_033491_010 Hb_003050_040--Hb_033491_010 Hb_005941_010 Hb_005941_010 Hb_003050_040--Hb_005941_010 Hb_004242_100 Hb_004242_100 Hb_003050_040--Hb_004242_100 Hb_003050_040--Hb_003352_050 Hb_005245_090 Hb_005245_090 Hb_003050_040--Hb_005245_090 Hb_002942_030 Hb_002942_030 Hb_003050_040--Hb_002942_030 Hb_001504_170 Hb_001504_170 Hb_013479_020--Hb_001504_170 Hb_013479_020--Hb_002942_030 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.199 8.91965 8.62301 25.7967 118.554 140.29
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.97 38.8257 40.4958 13.9097 11.2334

CAGE analysis