Hb_000028_060

Information

Type -
Description -
Location Contig28: 80038-82809
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_060 0.0 - - -
2 Hb_001545_050 0.1076920763 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
3 Hb_001902_130 0.1384509072 - - 60S ribosomal protein L36-2 [Morus notabilis]
4 Hb_007123_060 0.1495345756 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_003925_070 0.1542402127 - - ATOZI1, putative [Ricinus communis]
6 Hb_022181_030 0.1549676696 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
7 Hb_002232_040 0.1592189358 - - -
8 Hb_000562_030 0.161777037 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002411_080 0.1755341562 - - conserved hypothetical protein [Ricinus communis]
10 Hb_133724_010 0.1772739955 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002388_010 0.1773075763 - - -
12 Hb_014783_010 0.1775489578 - - cold-inducible RNA binding protein, putative [Ricinus communis]
13 Hb_001769_080 0.1780771002 - - hypothetical protein SORBIDRAFT_10g023200 [Sorghum bicolor]
14 Hb_001829_040 0.1786452673 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
15 Hb_183557_010 0.1791153731 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
16 Hb_004883_050 0.1821371249 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
17 Hb_106411_010 0.1832391318 - - Ribosomal protein S25 family protein [Theobroma cacao]
18 Hb_153258_050 0.1839531823 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
19 Hb_002687_080 0.1849712559 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_000584_020 0.1875900309 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000028_060 Hb_000028_060 Hb_001545_050 Hb_001545_050 Hb_000028_060--Hb_001545_050 Hb_001902_130 Hb_001902_130 Hb_000028_060--Hb_001902_130 Hb_007123_060 Hb_007123_060 Hb_000028_060--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_000028_060--Hb_003925_070 Hb_022181_030 Hb_022181_030 Hb_000028_060--Hb_022181_030 Hb_002232_040 Hb_002232_040 Hb_000028_060--Hb_002232_040 Hb_001545_050--Hb_007123_060 Hb_001545_050--Hb_003925_070 Hb_153258_050 Hb_153258_050 Hb_001545_050--Hb_153258_050 Hb_001545_050--Hb_001902_130 Hb_004883_050 Hb_004883_050 Hb_001545_050--Hb_004883_050 Hb_011224_060 Hb_011224_060 Hb_001902_130--Hb_011224_060 Hb_001902_130--Hb_022181_030 Hb_021419_020 Hb_021419_020 Hb_001902_130--Hb_021419_020 Hb_000562_030 Hb_000562_030 Hb_001902_130--Hb_000562_030 Hb_002784_080 Hb_002784_080 Hb_001902_130--Hb_002784_080 Hb_004127_010 Hb_004127_010 Hb_001902_130--Hb_004127_010 Hb_007123_060--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_007123_060--Hb_012760_130 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_076874_010 Hb_076874_010 Hb_003925_070--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_106411_010 Hb_106411_010 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_086022_010 Hb_086022_010 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_000096_170 Hb_000096_170 Hb_002232_040--Hb_000096_170 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_124953_020 Hb_124953_020 Hb_002232_040--Hb_124953_020 Hb_000538_240 Hb_000538_240 Hb_002232_040--Hb_000538_240 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.789298 0.419977 0.976676 1.60733 0.601096 1.22678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.609398 1.65046 0.0962848 0.474137 0.106847

CAGE analysis