Hb_000028_100

Information

Type transcription factor
Description TF Family: M-type
Location Contig28: 92987-93508
Sequence    

Annotation

kegg
ID rcu:RCOM_0569640
description mads box protein, putative
nr
ID XP_012074276.1
description PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
swissprot
ID Q4PSU4
description Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1
trembl
ID A0A067KW58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29175: 92966-93227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_100 0.0 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
2 Hb_003929_150 0.1147268254 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
3 Hb_000155_160 0.1151117051 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
4 Hb_002235_080 0.1220581262 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
5 Hb_003494_050 0.1238373441 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
6 Hb_000419_020 0.1242719856 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000441_110 0.1249822412 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
8 Hb_007747_050 0.1268014333 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
9 Hb_002239_050 0.1277382306 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
10 Hb_000699_090 0.1284067617 - - cyclophilin, putative [Ricinus communis]
11 Hb_001373_060 0.1291615003 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
12 Hb_003327_050 0.1293731779 - - surfeit locus protein, putative [Ricinus communis]
13 Hb_011236_010 0.1296151473 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
14 Hb_002232_060 0.1297204686 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
15 Hb_006198_070 0.134787492 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
16 Hb_000175_320 0.1358932202 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
17 Hb_000739_300 0.1397585823 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
18 Hb_000577_090 0.1406845801 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
19 Hb_001421_070 0.1424472546 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
20 Hb_000847_060 0.1428531933 - - hypothetical protein [Jatropha curcas]

Gene co-expression network

sample Hb_000028_100 Hb_000028_100 Hb_003929_150 Hb_003929_150 Hb_000028_100--Hb_003929_150 Hb_000155_160 Hb_000155_160 Hb_000028_100--Hb_000155_160 Hb_002235_080 Hb_002235_080 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000419_020 Hb_000419_020 Hb_000028_100--Hb_000419_020 Hb_000441_110 Hb_000441_110 Hb_000028_100--Hb_000441_110 Hb_003929_150--Hb_002235_080 Hb_011236_010 Hb_011236_010 Hb_003929_150--Hb_011236_010 Hb_006478_160 Hb_006478_160 Hb_003929_150--Hb_006478_160 Hb_003929_150--Hb_000155_160 Hb_007245_080 Hb_007245_080 Hb_003929_150--Hb_007245_080 Hb_001718_030 Hb_001718_030 Hb_003929_150--Hb_001718_030 Hb_000155_160--Hb_000419_020 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_007747_050 Hb_007747_050 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_002235_080--Hb_007245_080 Hb_002235_080--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_003494_050--Hb_007747_050 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_011671_100 Hb_011671_100 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_000441_110--Hb_004567_120 Hb_004453_020 Hb_004453_020 Hb_000441_110--Hb_004453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33324 4.25859 3.41235 5.54407 1.8571 4.2414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50586 18.6842 3.36036 4.56127 6.30847

CAGE analysis