Hb_000028_110

Information

Type -
Description -
Location Contig28: 94170-99939
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04810g
description hypothetical protein
nr
ID XP_012086263.1
description PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22702 PE=4 SV=1
Gene Ontology
ID GO:0006139
description PREDICTED: uncharacterized protein LOC105645305

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29175: 92966-93227 , PASA_asmbl_29177: 94189-99878 , PASA_asmbl_29178: 94319-98356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_110 0.0 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
2 Hb_000107_570 0.0741023848 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
3 Hb_158845_050 0.0842542324 - - PREDICTED: uncharacterized protein LOC105122890 [Populus euphratica]
4 Hb_002304_080 0.0939216861 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
5 Hb_000164_140 0.1055194124 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_006538_120 0.1083545795 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
7 Hb_093458_060 0.1100173171 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
8 Hb_002685_060 0.1113221247 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_000462_090 0.112901896 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
10 Hb_000300_660 0.11617631 - - unknown [Glycine max]
11 Hb_000622_240 0.1183366909 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
12 Hb_000371_100 0.1183516675 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
13 Hb_005672_020 0.1194400515 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
14 Hb_005731_160 0.1230763997 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000613_110 0.1271608871 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
16 Hb_009767_130 0.128408274 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
17 Hb_005276_010 0.12901056 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
18 Hb_003777_020 0.1305223259 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
19 Hb_002496_020 0.1326967844 - - DNA binding protein, putative [Ricinus communis]
20 Hb_009775_010 0.1328226718 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_110 Hb_000028_110 Hb_000107_570 Hb_000107_570 Hb_000028_110--Hb_000107_570 Hb_158845_050 Hb_158845_050 Hb_000028_110--Hb_158845_050 Hb_002304_080 Hb_002304_080 Hb_000028_110--Hb_002304_080 Hb_000164_140 Hb_000164_140 Hb_000028_110--Hb_000164_140 Hb_006538_120 Hb_006538_120 Hb_000028_110--Hb_006538_120 Hb_093458_060 Hb_093458_060 Hb_000028_110--Hb_093458_060 Hb_000622_240 Hb_000622_240 Hb_000107_570--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000107_570--Hb_000462_090 Hb_003666_030 Hb_003666_030 Hb_000107_570--Hb_003666_030 Hb_000702_080 Hb_000702_080 Hb_000107_570--Hb_000702_080 Hb_006117_040 Hb_006117_040 Hb_000107_570--Hb_006117_040 Hb_000613_110 Hb_000613_110 Hb_158845_050--Hb_000613_110 Hb_158845_050--Hb_002304_080 Hb_000608_380 Hb_000608_380 Hb_158845_050--Hb_000608_380 Hb_005731_160 Hb_005731_160 Hb_158845_050--Hb_005731_160 Hb_158845_050--Hb_006538_120 Hb_005672_020 Hb_005672_020 Hb_002304_080--Hb_005672_020 Hb_029695_110 Hb_029695_110 Hb_002304_080--Hb_029695_110 Hb_002304_080--Hb_006538_120 Hb_021346_030 Hb_021346_030 Hb_002304_080--Hb_021346_030 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_029920_030 Hb_029920_030 Hb_000164_140--Hb_029920_030 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_000345_370 Hb_000345_370 Hb_093458_060--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_093458_060--Hb_007769_040 Hb_003777_020 Hb_003777_020 Hb_093458_060--Hb_003777_020 Hb_002282_070 Hb_002282_070 Hb_093458_060--Hb_002282_070 Hb_001623_130 Hb_001623_130 Hb_093458_060--Hb_001623_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2141 8.89941 35.4967 24.4499 22.2632 33.8784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7195 35.4235 19.0577 13.293 101.143

CAGE analysis