Hb_000028_140

Information

Type -
Description -
Location Contig28: 126514-133672
Sequence    

Annotation

kegg
ID rcu:RCOM_0569510
description surfeit locus protein, putative
nr
ID XP_002530789.1
description surfeit locus protein, putative [Ricinus communis]
swissprot
ID Q9SE51
description Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1
trembl
ID B9SXS0
description Surfeit locus protein, putative OS=Ricinus communis GN=RCOM_0569510 PE=4 SV=1
Gene Ontology
ID GO:0016020
description surfeit locus protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29182: 127125-127240 , PASA_asmbl_29183: 127446-133638 , PASA_asmbl_29185: 127704-133258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_140 0.0 - - surfeit locus protein, putative [Ricinus communis]
2 Hb_027073_040 0.0692121644 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
3 Hb_001242_110 0.0698586852 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_000239_010 0.0747981496 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_001155_030 0.0781979983 - - 60S ribosomal protein L10A [Hevea brasiliensis]
6 Hb_000227_230 0.0864600918 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_003996_020 0.0893531496 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000979_230 0.0907582781 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
9 Hb_006641_010 0.0918709016 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_116898_010 0.0920293658 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
11 Hb_002759_060 0.0928250658 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
12 Hb_001829_060 0.0962844094 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
13 Hb_003226_280 0.0978325079 - - PREDICTED: peter Pan-like protein [Populus euphratica]
14 Hb_000024_030 0.098790357 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
15 Hb_000444_050 0.0989298017 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
16 Hb_000751_130 0.0993865278 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
17 Hb_000329_310 0.0995375314 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
18 Hb_004032_100 0.1003727822 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
19 Hb_155764_010 0.100483801 - - -
20 Hb_009666_040 0.1009571413 - - glutathione transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_140 Hb_000028_140 Hb_027073_040 Hb_027073_040 Hb_000028_140--Hb_027073_040 Hb_001242_110 Hb_001242_110 Hb_000028_140--Hb_001242_110 Hb_000239_010 Hb_000239_010 Hb_000028_140--Hb_000239_010 Hb_001155_030 Hb_001155_030 Hb_000028_140--Hb_001155_030 Hb_000227_230 Hb_000227_230 Hb_000028_140--Hb_000227_230 Hb_003996_020 Hb_003996_020 Hb_000028_140--Hb_003996_020 Hb_002759_060 Hb_002759_060 Hb_027073_040--Hb_002759_060 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_001242_110--Hb_003996_020 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_001242_110--Hb_027073_040 Hb_000979_230 Hb_000979_230 Hb_000239_010--Hb_000979_230 Hb_009666_040 Hb_009666_040 Hb_000239_010--Hb_009666_040 Hb_003226_280 Hb_003226_280 Hb_000239_010--Hb_003226_280 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_001141_280 Hb_001141_280 Hb_000239_010--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_000239_010--Hb_000205_270 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_006641_010 Hb_006641_010 Hb_001155_030--Hb_006641_010 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_001155_030--Hb_009666_040 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_003996_020--Hb_002759_060 Hb_006922_110 Hb_006922_110 Hb_003996_020--Hb_006922_110 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_003996_020--Hb_033834_040 Hb_154648_010 Hb_154648_010 Hb_003996_020--Hb_154648_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92582 0.805031 0.658958 1.33481 2.01305 4.61492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.882 5.71168 4.38687 3.21529 0.960825

CAGE analysis