Hb_000028_150

Information

Type transcription factor
Description TF Family: Tify
Location Contig28: 135601-140441
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04220g
description POPTRDRAFT_661656; hypothetical protein
nr
ID XP_012064635.1
description PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
swissprot
ID Q9LVI4
description Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
trembl
ID A0A067LI79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22919 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29186: 135380-140456 , PASA_asmbl_29187: 135443-140448 , PASA_asmbl_29188: 135422-137582
cDNA
(Sanger)
(ID:Location)		 030_M06.ab1: 136250-137528

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_150 0.0 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
2 Hb_002540_060 0.1040999288 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
3 Hb_002986_140 0.1220335782 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
4 Hb_001343_120 0.1232290484 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002435_090 0.1332183582 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_001442_050 0.1343117603 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
7 Hb_000500_330 0.1374526906 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
8 Hb_000169_070 0.1407670554 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
9 Hb_001999_260 0.1423328211 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
10 Hb_000207_140 0.1431937703 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
11 Hb_000974_040 0.1433690484 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
12 Hb_000110_240 0.1436655483 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
13 Hb_000768_120 0.1439669507 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
14 Hb_006681_020 0.1449809844 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
15 Hb_007479_010 0.145938367 - - Root phototropism protein, putative [Ricinus communis]
16 Hb_004007_170 0.148511822 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_006583_030 0.1495507638 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
18 Hb_004855_070 0.1514314074 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
19 Hb_002027_100 0.1524482075 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000574_380 0.1542972591 - - hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_150 Hb_000028_150 Hb_002540_060 Hb_002540_060 Hb_000028_150--Hb_002540_060 Hb_002986_140 Hb_002986_140 Hb_000028_150--Hb_002986_140 Hb_001343_120 Hb_001343_120 Hb_000028_150--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_000028_150--Hb_002435_090 Hb_001442_050 Hb_001442_050 Hb_000028_150--Hb_001442_050 Hb_000500_330 Hb_000500_330 Hb_000028_150--Hb_000500_330 Hb_002540_060--Hb_001343_120 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_000207_140 Hb_000207_140 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002540_060--Hb_002435_090 Hb_002942_120 Hb_002942_120 Hb_002986_140--Hb_002942_120 Hb_003638_040 Hb_003638_040 Hb_002986_140--Hb_003638_040 Hb_002986_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002986_140--Hb_003992_050 Hb_000169_070 Hb_000169_070 Hb_002986_140--Hb_000169_070 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002435_090--Hb_000207_140 Hb_188739_010 Hb_188739_010 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_000345_400 Hb_000345_400 Hb_001442_050--Hb_000345_400 Hb_000358_160 Hb_000358_160 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_001442_050--Hb_110266_010 Hb_001638_190 Hb_001638_190 Hb_001442_050--Hb_001638_190 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_005116_130 Hb_005116_130 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31981 2.67874 45.7123 5.74104 0.679559 1.17555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.713265 0.925827 1.2591 1.20028 19.4445

CAGE analysis