Hb_000028_180

Information

Type -
Description -
Location Contig28: 169504-185397
Sequence    

Annotation

kegg
ID rcu:RCOM_0054220
description kinase, putative (EC:2.7.11.13)
nr
ID XP_012064629.1
description PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
swissprot
ID F4J6F6
description Probable serine/threonine protein kinase IREH1 OS=Arabidopsis thaliana GN=IREH1 PE=1 SV=1
trembl
ID A0A067L7C1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22916 PE=4 SV=1
Gene Ontology
ID GO:0004697
description probable serine threonine protein kinase ireh1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29189: 170225-185321 , PASA_asmbl_29190: 169531-185319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_180 0.0 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
2 Hb_001252_120 0.0466716318 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
3 Hb_004324_130 0.0604606453 - - polypyrimidine tract binding protein, putative [Ricinus communis]
4 Hb_007479_040 0.0621682859 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022115_020 0.0629630111 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
6 Hb_004724_150 0.0646561635 - - expressed protein, putative [Ricinus communis]
7 Hb_002481_080 0.0647951294 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
8 Hb_000556_120 0.0654938244 - - Spastin, putative [Ricinus communis]
9 Hb_000083_120 0.0682143361 - - transcription factor, putative [Ricinus communis]
10 Hb_008725_230 0.0683423477 - - PREDICTED: CTP synthase [Jatropha curcas]
11 Hb_001157_090 0.0684625664 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
12 Hb_000111_290 0.0717101541 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
13 Hb_002169_050 0.0731515722 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
14 Hb_000185_030 0.0734784968 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
15 Hb_000297_010 0.075821972 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
16 Hb_002110_190 0.0761964979 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
17 Hb_001584_120 0.0763125389 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
18 Hb_000049_210 0.0769861533 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
19 Hb_002044_150 0.0781794237 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_001876_050 0.0783652421 - - hypothetical protein JCGZ_01286 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_180 Hb_000028_180 Hb_001252_120 Hb_001252_120 Hb_000028_180--Hb_001252_120 Hb_004324_130 Hb_004324_130 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_022115_020 Hb_022115_020 Hb_000028_180--Hb_022115_020 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_008725_230 Hb_008725_230 Hb_001252_120--Hb_008725_230 Hb_000556_120 Hb_000556_120 Hb_001252_120--Hb_000556_120 Hb_001252_120--Hb_004324_130 Hb_001584_120 Hb_001584_120 Hb_001252_120--Hb_001584_120 Hb_001252_120--Hb_022115_020 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150 Hb_000297_010 Hb_000297_010 Hb_004724_150--Hb_000297_010 Hb_001341_170 Hb_001341_170 Hb_004724_150--Hb_001341_170 Hb_000245_040 Hb_000245_040 Hb_004724_150--Hb_000245_040 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7871 13.8653 12.6506 15.2292 12.1311 15.6226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.959 13.7545 21.1886 21.5123 11.6473

CAGE analysis