Hb_000028_210

Information

Type -
Description -
Location Contig28: 211124-211349
Sequence    

Annotation

kegg
ID csv:101215426
description chaperone protein DnaJ-like
nr
ID KDO62799.1
description hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
swissprot
ID Q8RB67
description Chaperone protein DnaJ OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1
trembl
ID A0A067F5Z6
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0103302mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description chaperone protein dnaj mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_210 0.0 - - hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
2 Hb_002783_060 0.2181786696 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_000810_020 0.2211244803 - - -
4 Hb_007763_050 0.2283292258 - - hypothetical protein L484_012752 [Morus notabilis]
5 Hb_007124_010 0.2296725574 - - unnamed protein product [Coffea canephora]
6 Hb_177103_010 0.2317937636 - - PREDICTED: histone H2AX [Elaeis guineensis]
7 Hb_000161_120 0.2355219219 - - unnamed protein product [Vitis vinifera]
8 Hb_006846_140 0.2356005509 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005731_140 0.2363393513 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
10 Hb_010565_040 0.237424201 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
11 Hb_012052_010 0.2423311376 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
12 Hb_168737_010 0.2446410668 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004235_030 0.2450822609 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
14 Hb_025190_010 0.2457916464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001427_060 0.2512153148 - - -
16 Hb_000181_150 0.2515801073 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
17 Hb_005085_030 0.2516748633 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
18 Hb_002205_060 0.2521445513 - - -
19 Hb_006198_090 0.2527845346 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
20 Hb_003688_110 0.2532360159 - - -

Gene co-expression network

sample Hb_000028_210 Hb_000028_210 Hb_002783_060 Hb_002783_060 Hb_000028_210--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_000028_210--Hb_000810_020 Hb_007763_050 Hb_007763_050 Hb_000028_210--Hb_007763_050 Hb_007124_010 Hb_007124_010 Hb_000028_210--Hb_007124_010 Hb_177103_010 Hb_177103_010 Hb_000028_210--Hb_177103_010 Hb_000161_120 Hb_000161_120 Hb_000028_210--Hb_000161_120 Hb_002783_060--Hb_000810_020 Hb_002960_050 Hb_002960_050 Hb_002783_060--Hb_002960_050 Hb_006846_140 Hb_006846_140 Hb_002783_060--Hb_006846_140 Hb_005085_030 Hb_005085_030 Hb_002783_060--Hb_005085_030 Hb_005731_140 Hb_005731_140 Hb_002783_060--Hb_005731_140 Hb_002783_060--Hb_007124_010 Hb_002482_060 Hb_002482_060 Hb_000810_020--Hb_002482_060 Hb_006198_090 Hb_006198_090 Hb_000810_020--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_000810_020--Hb_005679_070 Hb_000810_020--Hb_005731_140 Hb_000810_020--Hb_005085_030 Hb_166480_010 Hb_166480_010 Hb_007763_050--Hb_166480_010 Hb_002168_010 Hb_002168_010 Hb_007763_050--Hb_002168_010 Hb_010368_030 Hb_010368_030 Hb_007763_050--Hb_010368_030 Hb_000015_070 Hb_000015_070 Hb_007763_050--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_007763_050--Hb_001396_250 Hb_175976_010 Hb_175976_010 Hb_007763_050--Hb_175976_010 Hb_007124_010--Hb_005731_140 Hb_005305_060 Hb_005305_060 Hb_007124_010--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_007124_010--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_007124_010--Hb_000329_770 Hb_007124_010--Hb_006846_140 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_007188_030 Hb_007188_030 Hb_177103_010--Hb_007188_030 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_000996_170 Hb_000996_170 Hb_000161_120--Hb_000996_170 Hb_136731_010 Hb_136731_010 Hb_000161_120--Hb_136731_010 Hb_000176_120 Hb_000176_120 Hb_000161_120--Hb_000176_120 Hb_150360_010 Hb_150360_010 Hb_000161_120--Hb_150360_010 Hb_005054_070 Hb_005054_070 Hb_000161_120--Hb_005054_070 Hb_012052_010 Hb_012052_010 Hb_000161_120--Hb_012052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.39204 0 12.7052 6.12452 55.9241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.436 10.8164 2.3717 4.52258 8.57408

CAGE analysis