Hb_000028_220

Information

Type -
Description -
Location Contig28: 213526-217888
Sequence    

Annotation

kegg
ID rcu:RCOM_0570000
description chaperone protein DNAj, putative
nr
ID XP_012091084.1
description PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
swissprot
ID Q8EUM4
description Chaperone protein DnaJ OS=Mycoplasma penetrans (strain HF-2) GN=dnaJ PE=3 SV=1
trembl
ID A0A067JP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03276 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dnaj homolog subfamily a member mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_220 0.0 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
2 Hb_008322_010 0.1344582081 - - PREDICTED: DNA repair protein RAD51 homolog 3 [Jatropha curcas]
3 Hb_001502_070 0.1564758342 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
4 Hb_009803_040 0.1623101378 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
5 Hb_000331_290 0.165657473 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011485_040 0.1688846556 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL3 [Jatropha curcas]
7 Hb_006634_040 0.1731625981 - - hypothetical protein VITISV_030841 [Vitis vinifera]
8 Hb_007044_080 0.1839046423 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
9 Hb_001124_120 0.1862479019 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
10 Hb_000627_230 0.1870734253 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_154623_010 0.1933046914 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
12 Hb_000429_200 0.1934400318 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
13 Hb_000933_090 0.1986712778 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
14 Hb_004030_050 0.1989140701 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
15 Hb_028390_010 0.2003657495 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
16 Hb_001421_020 0.2005960072 - - hypothetical protein F383_00667 [Gossypium arboreum]
17 Hb_002027_070 0.2009257242 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
18 Hb_003813_130 0.2010742654 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
19 Hb_000922_410 0.2013009585 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
20 Hb_000322_090 0.2017155669 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_220 Hb_000028_220 Hb_008322_010 Hb_008322_010 Hb_000028_220--Hb_008322_010 Hb_001502_070 Hb_001502_070 Hb_000028_220--Hb_001502_070 Hb_009803_040 Hb_009803_040 Hb_000028_220--Hb_009803_040 Hb_000331_290 Hb_000331_290 Hb_000028_220--Hb_000331_290 Hb_011485_040 Hb_011485_040 Hb_000028_220--Hb_011485_040 Hb_006634_040 Hb_006634_040 Hb_000028_220--Hb_006634_040 Hb_150986_010 Hb_150986_010 Hb_008322_010--Hb_150986_010 Hb_000933_090 Hb_000933_090 Hb_008322_010--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_008322_010--Hb_007044_080 Hb_003813_130 Hb_003813_130 Hb_008322_010--Hb_003813_130 Hb_001199_020 Hb_001199_020 Hb_008322_010--Hb_001199_020 Hb_002027_070 Hb_002027_070 Hb_008322_010--Hb_002027_070 Hb_001421_020 Hb_001421_020 Hb_001502_070--Hb_001421_020 Hb_021443_070 Hb_021443_070 Hb_001502_070--Hb_021443_070 Hb_001221_410 Hb_001221_410 Hb_001502_070--Hb_001221_410 Hb_002149_020 Hb_002149_020 Hb_001502_070--Hb_002149_020 Hb_015978_060 Hb_015978_060 Hb_001502_070--Hb_015978_060 Hb_009838_090 Hb_009838_090 Hb_001502_070--Hb_009838_090 Hb_009803_040--Hb_006634_040 Hb_003025_020 Hb_003025_020 Hb_009803_040--Hb_003025_020 Hb_001124_120 Hb_001124_120 Hb_009803_040--Hb_001124_120 Hb_000076_270 Hb_000076_270 Hb_009803_040--Hb_000076_270 Hb_003788_050 Hb_003788_050 Hb_009803_040--Hb_003788_050 Hb_000429_200 Hb_000429_200 Hb_009803_040--Hb_000429_200 Hb_002349_040 Hb_002349_040 Hb_000331_290--Hb_002349_040 Hb_006096_040 Hb_006096_040 Hb_000331_290--Hb_006096_040 Hb_000331_290--Hb_006634_040 Hb_001484_060 Hb_001484_060 Hb_000331_290--Hb_001484_060 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010 Hb_011485_040--Hb_001502_070 Hb_004226_020 Hb_004226_020 Hb_011485_040--Hb_004226_020 Hb_011485_040--Hb_021443_070 Hb_003656_110 Hb_003656_110 Hb_011485_040--Hb_003656_110 Hb_000028_040 Hb_000028_040 Hb_011485_040--Hb_000028_040 Hb_000933_150 Hb_000933_150 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_000661_160 Hb_000661_160 Hb_006634_040--Hb_000661_160 Hb_006634_040--Hb_003788_050 Hb_006634_040--Hb_001484_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.472047 0.167822 0.211352 0.408643 1.32842 0.387458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35294 0.245364 0.285222 0.369406 0.315516

CAGE analysis