Hb_000028_240

Information

Type -
Description -
Location Contig28: 220293-222082
Sequence    

Annotation

kegg
ID rcu:RCOM_0570410
description hypothetical protein
nr
ID XP_002529552.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q96GN5
description Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2
trembl
ID B9SU83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0570410 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc-finger domain of monoamine-oxidase a repressor r1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29193: 220297-221457 , PASA_asmbl_29194: 221482-221891 , PASA_asmbl_29196: 222976-223639 , PASA_asmbl_29198: 222862-224233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002979_030 0.1075797958 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
3 Hb_000028_250 0.1585404754 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
4 Hb_006570_040 0.1612987533 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
5 Hb_005162_120 0.1721978191 - - ferric reductase oxidase [Manihot esculenta]
6 Hb_000441_210 0.1722632832 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
7 Hb_002205_180 0.1724406863 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
8 Hb_000364_140 0.1729790411 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
9 Hb_005946_020 0.1738110666 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
10 Hb_002007_040 0.1740041388 - - unnamed protein product [Coffea canephora]
11 Hb_010705_040 0.1744901841 - - PREDICTED: kinesin-4 [Jatropha curcas]
12 Hb_000347_160 0.1773235331 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
13 Hb_001277_120 0.1778522967 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_014497_070 0.1813477778 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
15 Hb_000142_030 0.1825090446 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_002078_310 0.1830372591 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
17 Hb_008725_240 0.183224348 - - conserved hypothetical protein [Ricinus communis]
18 Hb_114292_010 0.1836000101 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000189_350 0.1841617853 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
20 Hb_000115_190 0.1848328806 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_240 Hb_000028_240 Hb_002979_030 Hb_002979_030 Hb_000028_240--Hb_002979_030 Hb_000028_250 Hb_000028_250 Hb_000028_240--Hb_000028_250 Hb_006570_040 Hb_006570_040 Hb_000028_240--Hb_006570_040 Hb_005162_120 Hb_005162_120 Hb_000028_240--Hb_005162_120 Hb_000441_210 Hb_000441_210 Hb_000028_240--Hb_000441_210 Hb_002205_180 Hb_002205_180 Hb_000028_240--Hb_002205_180 Hb_002007_040 Hb_002007_040 Hb_002979_030--Hb_002007_040 Hb_000155_150 Hb_000155_150 Hb_002979_030--Hb_000155_150 Hb_003401_010 Hb_003401_010 Hb_002979_030--Hb_003401_010 Hb_002979_030--Hb_006570_040 Hb_000663_070 Hb_000663_070 Hb_002979_030--Hb_000663_070 Hb_000115_190 Hb_000115_190 Hb_000028_250--Hb_000115_190 Hb_000028_250--Hb_005162_120 Hb_001377_340 Hb_001377_340 Hb_000028_250--Hb_001377_340 Hb_001755_040 Hb_001755_040 Hb_000028_250--Hb_001755_040 Hb_000388_040 Hb_000388_040 Hb_000028_250--Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000028_250--Hb_003767_030 Hb_005946_020 Hb_005946_020 Hb_006570_040--Hb_005946_020 Hb_000139_280 Hb_000139_280 Hb_006570_040--Hb_000139_280 Hb_000190_220 Hb_000190_220 Hb_006570_040--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_006570_040--Hb_000260_040 Hb_000956_050 Hb_000956_050 Hb_006570_040--Hb_000956_050 Hb_005162_120--Hb_000115_190 Hb_002639_170 Hb_002639_170 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_004963_020 Hb_004963_020 Hb_000441_210--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_000441_210--Hb_004102_090 Hb_010705_040 Hb_010705_040 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_000441_210--Hb_002205_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030 Hb_002205_180--Hb_004102_090 Hb_000189_350 Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_002205_180--Hb_010705_040 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0432431 0.501345 21.6015 6.35392 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0891 1.5185 0.0717547 0.735592 0.797597

CAGE analysis