Hb_000028_340

Information

Type -
Description -
Location Contig28: 311365-325834
Sequence    

Annotation

kegg
ID pmum:103342525
description potassium channel SKOR-like
nr
ID XP_008244385.1
description PREDICTED: potassium channel SKOR-like [Prunus mume]
swissprot
ID Q9M8S6
description Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1
trembl
ID B9T5D2
description Potassium channel SKOR, putative OS=Ricinus communis GN=RCOM_0287640 PE=4 SV=1
Gene Ontology
ID GO:0004622
description potassium channel skor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29203: 322066-324663 , PASA_asmbl_29204: 323518-324817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_340 0.0 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
2 Hb_000062_640 0.1232686216 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
3 Hb_000056_280 0.1300099429 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_003470_050 0.1313903111 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000649_120 0.1363085816 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_006469_070 0.1383310793 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
7 Hb_008468_030 0.1406496739 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
8 Hb_005054_170 0.1457532799 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
9 Hb_029510_100 0.1538358085 - - scab resistance family protein [Populus trichocarpa]
10 Hb_009535_030 0.1571277192 - - CP2 [Hevea brasiliensis]
11 Hb_000062_530 0.1581149242 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
12 Hb_001247_270 0.1583430632 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
13 Hb_080477_080 0.1592917686 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
14 Hb_001054_090 0.159916702 - - Potassium channel SKOR, putative [Ricinus communis]
15 Hb_006683_020 0.1600442405 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
16 Hb_002170_020 0.1602385805 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
17 Hb_001699_170 0.160306198 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000465_260 0.1609328033 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_002151_100 0.1610254642 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
20 Hb_005016_020 0.1611378734 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000028_340 Hb_000028_340 Hb_000062_640 Hb_000062_640 Hb_000028_340--Hb_000062_640 Hb_000056_280 Hb_000056_280 Hb_000028_340--Hb_000056_280 Hb_003470_050 Hb_003470_050 Hb_000028_340--Hb_003470_050 Hb_000649_120 Hb_000649_120 Hb_000028_340--Hb_000649_120 Hb_006469_070 Hb_006469_070 Hb_000028_340--Hb_006469_070 Hb_008468_030 Hb_008468_030 Hb_000028_340--Hb_008468_030 Hb_005054_170 Hb_005054_170 Hb_000062_640--Hb_005054_170 Hb_000062_640--Hb_003470_050 Hb_001446_060 Hb_001446_060 Hb_000062_640--Hb_001446_060 Hb_002289_150 Hb_002289_150 Hb_000062_640--Hb_002289_150 Hb_005489_150 Hb_005489_150 Hb_000062_640--Hb_005489_150 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_003470_050--Hb_000649_120 Hb_002603_040 Hb_002603_040 Hb_003470_050--Hb_002603_040 Hb_000479_110 Hb_000479_110 Hb_003470_050--Hb_000479_110 Hb_000220_080 Hb_000220_080 Hb_003470_050--Hb_000220_080 Hb_002235_310 Hb_002235_310 Hb_000649_120--Hb_002235_310 Hb_000649_120--Hb_000072_020 Hb_000866_110 Hb_000866_110 Hb_000649_120--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_002046_060 Hb_002046_060 Hb_006469_070--Hb_002046_060 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_007576_200 Hb_007576_200 Hb_008468_030--Hb_007576_200 Hb_000120_230 Hb_000120_230 Hb_008468_030--Hb_000120_230 Hb_008468_030--Hb_000649_120 Hb_008468_030--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_008468_030--Hb_000025_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241339 2.53749 0.837709 4.11328 0.175563 0.441687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35994 0.242772 1.08052 2.08837 1.46303

CAGE analysis