Hb_000028_350

Information

Type -
Description -
Location Contig28: 327139-332010
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03970g
description POPTRDRAFT_834190; hypothetical protein
nr
ID XP_012072919.1
description PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07951 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29205: 327191-332117 , PASA_asmbl_29207: 330864-330996
cDNA
(Sanger)
(ID:Location)		 045_O17.ab1: 331907-332117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_350 0.0 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
2 Hb_002111_040 0.0740214751 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
3 Hb_000808_190 0.07509875 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
4 Hb_002284_230 0.0900790391 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
5 Hb_000363_360 0.0932600941 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
6 Hb_000563_200 0.0951607456 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
7 Hb_004672_010 0.0959215435 - - ecotropic viral integration site, putative [Ricinus communis]
8 Hb_001390_130 0.0973355181 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
9 Hb_011344_120 0.0975876448 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
10 Hb_001353_010 0.0980073859 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
11 Hb_005305_110 0.0991227046 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
12 Hb_011344_190 0.099318826 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_005054_210 0.1001071594 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
14 Hb_031862_100 0.1008608109 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000254_050 0.1008924579 - - hypothetical protein VITISV_010510 [Vitis vinifera]
16 Hb_005307_050 0.1010895028 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
17 Hb_001437_060 0.101119881 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
18 Hb_008232_010 0.101207908 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_003697_050 0.1013042792 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
20 Hb_000291_080 0.1019726309 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_350 Hb_000028_350 Hb_002111_040 Hb_002111_040 Hb_000028_350--Hb_002111_040 Hb_000808_190 Hb_000808_190 Hb_000028_350--Hb_000808_190 Hb_002284_230 Hb_002284_230 Hb_000028_350--Hb_002284_230 Hb_000363_360 Hb_000363_360 Hb_000028_350--Hb_000363_360 Hb_000563_200 Hb_000563_200 Hb_000028_350--Hb_000563_200 Hb_004672_010 Hb_004672_010 Hb_000028_350--Hb_004672_010 Hb_000291_080 Hb_000291_080 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_006573_020 Hb_006573_020 Hb_000808_190--Hb_006573_020 Hb_001353_010 Hb_001353_010 Hb_000808_190--Hb_001353_010 Hb_002000_140 Hb_002000_140 Hb_000808_190--Hb_002000_140 Hb_005307_050 Hb_005307_050 Hb_000808_190--Hb_005307_050 Hb_002303_060 Hb_002303_060 Hb_000808_190--Hb_002303_060 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1018 7.05835 15.4887 39.5674 17.8771 21.4634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3883 42.9835 32.4018 28.7343 17.978

CAGE analysis