Hb_000028_360

Information

Type -
Description -
Location Contig28: 336149-337447
Sequence    

Annotation

kegg
ID rcu:RCOM_0208530
description ubiquitin-protein ligase, putative
nr
ID XP_002533776.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID B9T6A7
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0208530 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29209: 336944-337179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_360 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_041534_010 0.096238286 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
3 Hb_006916_220 0.1002790301 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
4 Hb_013591_010 0.1060953537 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
5 Hb_002422_020 0.1066354722 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
6 Hb_005605_030 0.1072343412 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_000731_020 0.1159775447 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
8 Hb_019978_010 0.1186543974 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
9 Hb_002922_010 0.1189213452 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
10 Hb_137612_010 0.1201693438 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000111_150 0.1206275496 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_004724_290 0.1233604489 transcription factor TF Family: NAC -
13 Hb_010573_030 0.1237120982 - - conserved hypothetical protein [Ricinus communis]
14 Hb_064692_010 0.1292148733 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_011429_010 0.1334261059 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
16 Hb_004724_310 0.1356779567 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
17 Hb_003674_010 0.1360075665 - - purine transporter, putative [Ricinus communis]
18 Hb_000509_040 0.1360452997 - - hypothetical protein VITISV_009716 [Vitis vinifera]
19 Hb_036754_040 0.1372200911 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_000221_280 0.1375230991 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]

Gene co-expression network

sample Hb_000028_360 Hb_000028_360 Hb_041534_010 Hb_041534_010 Hb_000028_360--Hb_041534_010 Hb_006916_220 Hb_006916_220 Hb_000028_360--Hb_006916_220 Hb_013591_010 Hb_013591_010 Hb_000028_360--Hb_013591_010 Hb_002422_020 Hb_002422_020 Hb_000028_360--Hb_002422_020 Hb_005605_030 Hb_005605_030 Hb_000028_360--Hb_005605_030 Hb_000731_020 Hb_000731_020 Hb_000028_360--Hb_000731_020 Hb_064692_010 Hb_064692_010 Hb_041534_010--Hb_064692_010 Hb_041534_010--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_041534_010--Hb_137612_010 Hb_041534_010--Hb_002422_020 Hb_000338_020 Hb_000338_020 Hb_041534_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_041534_010--Hb_157957_010 Hb_004724_290 Hb_004724_290 Hb_006916_220--Hb_004724_290 Hb_004724_310 Hb_004724_310 Hb_006916_220--Hb_004724_310 Hb_002006_110 Hb_002006_110 Hb_006916_220--Hb_002006_110 Hb_019978_010 Hb_019978_010 Hb_006916_220--Hb_019978_010 Hb_010136_020 Hb_010136_020 Hb_006916_220--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_006916_220--Hb_184752_010 Hb_013591_010--Hb_002422_020 Hb_013591_010--Hb_137612_010 Hb_013591_010--Hb_064692_010 Hb_010573_030 Hb_010573_030 Hb_013591_010--Hb_010573_030 Hb_007728_010 Hb_007728_010 Hb_013591_010--Hb_007728_010 Hb_002422_020--Hb_137612_010 Hb_002422_020--Hb_010573_030 Hb_002422_020--Hb_007728_010 Hb_002422_020--Hb_064692_010 Hb_000111_150 Hb_000111_150 Hb_005605_030--Hb_000111_150 Hb_007407_010 Hb_007407_010 Hb_005605_030--Hb_007407_010 Hb_000509_040 Hb_000509_040 Hb_005605_030--Hb_000509_040 Hb_000133_060 Hb_000133_060 Hb_005605_030--Hb_000133_060 Hb_002922_010 Hb_002922_010 Hb_005605_030--Hb_002922_010 Hb_000221_280 Hb_000221_280 Hb_000731_020--Hb_000221_280 Hb_000731_020--Hb_019978_010 Hb_000313_190 Hb_000313_190 Hb_000731_020--Hb_000313_190 Hb_000731_020--Hb_006916_220 Hb_000731_020--Hb_004724_310 Hb_003071_040 Hb_003071_040 Hb_000731_020--Hb_003071_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.49662 0.812506 1.61312 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12782 0

CAGE analysis