Hb_000028_370

Information

Type -
Description -
Location Contig28: 339698-342680
Sequence    

Annotation

kegg
ID zma:100273553
description uncharacterized LOC100273553
nr
ID KHN43657.1
description Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
swissprot
ID P93163
description Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1
trembl
ID K7L0X8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29210: 339870-340119 , PASA_asmbl_29211: 342442-355204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_370 0.0 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
2 Hb_002205_110 0.0392908562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001205_240 0.0436578314 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
4 Hb_008725_230 0.0608266865 - - PREDICTED: CTP synthase [Jatropha curcas]
5 Hb_002232_410 0.0648912259 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
6 Hb_003761_010 0.0673552718 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_168978_010 0.0679139612 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
8 Hb_010997_080 0.069107651 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
9 Hb_004117_110 0.0713701334 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
10 Hb_001359_050 0.0716950801 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000732_010 0.0722572989 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
12 Hb_000649_110 0.0723149102 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
13 Hb_013738_020 0.0729684104 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_002026_210 0.0736122192 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
15 Hb_006831_140 0.0762589298 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_003906_200 0.0765798603 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
17 Hb_001221_110 0.0767861519 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
18 Hb_001408_040 0.0769715455 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
19 Hb_024958_010 0.0775155595 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
20 Hb_000441_140 0.0776276917 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_370 Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000028_370--Hb_002205_110 Hb_001205_240 Hb_001205_240 Hb_000028_370--Hb_001205_240 Hb_008725_230 Hb_008725_230 Hb_000028_370--Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_002205_110--Hb_001205_240 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_001205_240--Hb_003761_010 Hb_001205_240--Hb_008725_230 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_003761_010--Hb_002205_110 Hb_003761_010--Hb_002232_410 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_168978_010--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93487 8.21676 4.88448 8.33676 4.67133 6.71973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27447 8.28456 5.3738 6.52394 4.80833

CAGE analysis