Hb_000028_390

Information

Type -
Description -
Location Contig28: 353733-357135
Sequence    

Annotation

kegg
ID rcu:RCOM_0287620
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012072921.1
description PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
swissprot
ID Q9C516
description Extra-large guanine nucleotide-binding protein 3 OS=Arabidopsis thaliana GN=XLG3 PE=1 SV=1
trembl
ID A0A067KMS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07954 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29211: 342442-355204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_390 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
2 Hb_009296_040 0.0615995606 - - hypothetical protein L484_007435 [Morus notabilis]
3 Hb_001876_010 0.0626473423 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
4 Hb_000174_180 0.063914836 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_004449_080 0.0670071368 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
6 Hb_000140_210 0.0684124217 - - sec10, putative [Ricinus communis]
7 Hb_000011_060 0.0704350215 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
8 Hb_000388_090 0.0733636157 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
9 Hb_000537_050 0.0737795129 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
10 Hb_002908_050 0.0740880689 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
11 Hb_000984_170 0.0783380475 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
12 Hb_000592_030 0.0795630479 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
13 Hb_001417_030 0.0803101683 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_001440_030 0.0809017799 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
15 Hb_002768_060 0.0815042315 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_000872_010 0.0819387404 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
17 Hb_019337_020 0.0820560023 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
18 Hb_019616_020 0.0821513576 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
19 Hb_085781_020 0.0823799837 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
20 Hb_071130_010 0.0832617882 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_390 Hb_000028_390 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_001876_010--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_000665_060 Hb_000665_060 Hb_000174_180--Hb_000665_060 Hb_001449_040 Hb_001449_040 Hb_000174_180--Hb_001449_040 Hb_000590_050 Hb_000590_050 Hb_000174_180--Hb_000590_050 Hb_000192_080 Hb_000192_080 Hb_000174_180--Hb_000192_080 Hb_019616_020 Hb_019616_020 Hb_000174_180--Hb_019616_020 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_006909_010 Hb_006909_010 Hb_004449_080--Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_004449_080--Hb_164898_010 Hb_003294_090 Hb_003294_090 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000011_060--Hb_000614_240 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64512 3.92851 1.67083 4.22257 2.86062 4.59417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42948 2.41984 4.72755 5.58173 5.22122

CAGE analysis