Hb_000028_470

Information

Type transcription factor
Description TF Family: GNAT
Location Contig28: 454458-456958
Sequence    

Annotation

kegg
ID rcu:RCOM_0135420
description N-acetyltransferase, putative
nr
ID XP_002533736.1
description N-acetyltransferase, putative [Ricinus communis]
swissprot
ID Q86UY6
description N-alpha-acetyltransferase 40 OS=Homo sapiens GN=NAA40 PE=1 SV=1
trembl
ID B9T667
description N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_0135420 PE=4 SV=1
Gene Ontology
ID GO:0016740
description n-alpha-acetyltransferase 40 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29225: 454174-456863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_470 0.0 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
2 Hb_005754_020 0.0609687667 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
3 Hb_178968_150 0.0667261216 - - zinc finger protein, putative [Ricinus communis]
4 Hb_001493_100 0.0724933221 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
5 Hb_002377_040 0.0758763614 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_001673_120 0.0817042307 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
7 Hb_000784_090 0.0827896257 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_057183_040 0.0896634161 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
9 Hb_000085_340 0.0903942985 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
10 Hb_000359_170 0.0948145711 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
11 Hb_000062_230 0.0953571318 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
12 Hb_001840_080 0.0958629415 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
13 Hb_000258_430 0.0973108802 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_000714_020 0.0987722243 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
15 Hb_002044_090 0.0987979204 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
16 Hb_000771_110 0.0994757769 - - protein phosphatase 2C [Hevea brasiliensis]
17 Hb_003638_140 0.1035021074 - - protein binding protein, putative [Ricinus communis]
18 Hb_127979_010 0.104335233 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
19 Hb_168918_020 0.1050254114 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_012340_030 0.1053164999 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_470 Hb_000028_470 Hb_005754_020 Hb_005754_020 Hb_000028_470--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_005754_020--Hb_002377_040 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_178968_150--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_178968_150--Hb_004813_010 Hb_178968_150--Hb_005754_020 Hb_004738_090 Hb_004738_090 Hb_178968_150--Hb_004738_090 Hb_178968_150--Hb_000784_090 Hb_001493_100--Hb_004813_010 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_001493_100--Hb_000784_090 Hb_002377_040--Hb_000062_230 Hb_002377_040--Hb_002044_090 Hb_002377_040--Hb_003352_050 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_001140_200 Hb_001140_200 Hb_001673_120--Hb_001140_200 Hb_009404_010 Hb_009404_010 Hb_001673_120--Hb_009404_010 Hb_057183_040 Hb_057183_040 Hb_001673_120--Hb_057183_040 Hb_001673_120--Hb_005754_020 Hb_001673_120--Hb_178968_150 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.4211 10.1557 10.2906 10.8887 47.6213 63.4491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0478 32.7887 42.8791 9.29467 5.33865

CAGE analysis