Hb_000028_480

Information

Type -
Description -
Location Contig28: 457922-472745
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05240g
description dihydroxyacetone kinase family protein
nr
ID XP_012065731.1
description PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
swissprot
ID O04059
description Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV=1
trembl
ID A0A067L4R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26536 PE=4 SV=1
Gene Ontology
ID GO:0004371
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29226: 458007-472657 , PASA_asmbl_29227: 457989-472657 , PASA_asmbl_29228: 469736-470426 , PASA_asmbl_29230: 471188-471447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_480 0.0 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
2 Hb_002518_260 0.0468715243 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
3 Hb_007479_040 0.0525787049 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000792_010 0.0556269182 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
5 Hb_001198_100 0.0587407323 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
6 Hb_000976_300 0.0597791167 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
7 Hb_028912_050 0.0604841395 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
8 Hb_004225_050 0.0641850509 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_009767_110 0.0664093767 - - -
10 Hb_044728_010 0.0669719457 - - -
11 Hb_002496_010 0.0681751924 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
12 Hb_004254_090 0.069061516 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
13 Hb_001341_170 0.0695273477 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_007575_050 0.0697039569 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
15 Hb_188063_020 0.0697133585 - - conserved hypothetical protein [Ricinus communis]
16 Hb_156279_020 0.0700275197 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
17 Hb_011386_010 0.0701273199 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000494_070 0.0703592274 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
19 Hb_000329_710 0.071230672 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_004143_060 0.0714531825 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_480 Hb_000028_480 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000792_010 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_000792_010--Hb_000329_710 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_000792_010--Hb_011386_010 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_002496_010 Hb_002496_010 Hb_000976_300--Hb_002496_010 Hb_001357_020 Hb_001357_020 Hb_000976_300--Hb_001357_020 Hb_000976_300--Hb_002518_260 Hb_000977_110 Hb_000977_110 Hb_000976_300--Hb_000977_110 Hb_002600_150 Hb_002600_150 Hb_000976_300--Hb_002600_150 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.829 11.8057 9.46663 9.91326 14.3856 18.3383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3506 13.9441 17.8408 16.3485 16.4025

CAGE analysis