Hb_000028_500

Information

Type transcription factor
Description TF Family: C2H2
Location Contig28: 483038-485773
Sequence    

Annotation

kegg
ID rcu:RCOM_0360090
description nucleic acid binding protein, putative
nr
ID XP_002534293.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID B9T7S4
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0360090 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein shoot gravitropism 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29233: 485153-485481 , PASA_asmbl_29234: 485160-485589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_500 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000398_050 0.1912715175 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
3 Hb_026198_030 0.2021830058 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
4 Hb_003159_150 0.216525646 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
5 Hb_002893_030 0.2261375835 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
6 Hb_002000_090 0.2261770427 - - 60S ribosomal protein L3B [Hevea brasiliensis]
7 Hb_005539_260 0.2276414139 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
8 Hb_001894_180 0.227795773 - - galactinol synthase [Manihot esculenta]
9 Hb_001123_250 0.2293936116 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
10 Hb_002284_080 0.229595401 - - protein with unknown function [Ricinus communis]
11 Hb_000975_200 0.2374430096 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
12 Hb_004109_210 0.2399571608 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
13 Hb_126711_010 0.2485160407 - - JAZ10 [Hevea brasiliensis]
14 Hb_000103_190 0.249184441 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
15 Hb_001898_140 0.2495641283 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
16 Hb_000062_640 0.2500163481 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
17 Hb_014720_050 0.2502367933 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
18 Hb_114310_060 0.2502828255 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2G, putative [Ricinus communis]
19 Hb_000365_280 0.2506552325 - - calcium binding protein/cast, putative [Ricinus communis]
20 Hb_004162_060 0.2520884402 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000028_500 Hb_000028_500 Hb_000398_050 Hb_000398_050 Hb_000028_500--Hb_000398_050 Hb_026198_030 Hb_026198_030 Hb_000028_500--Hb_026198_030 Hb_003159_150 Hb_003159_150 Hb_000028_500--Hb_003159_150 Hb_002893_030 Hb_002893_030 Hb_000028_500--Hb_002893_030 Hb_002000_090 Hb_002000_090 Hb_000028_500--Hb_002000_090 Hb_005539_260 Hb_005539_260 Hb_000028_500--Hb_005539_260 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070 Hb_026198_030--Hb_023344_070 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_002876_160 Hb_002876_160 Hb_026198_030--Hb_002876_160 Hb_001123_250 Hb_001123_250 Hb_003159_150--Hb_001123_250 Hb_003159_150--Hb_002893_030 Hb_000365_280 Hb_000365_280 Hb_003159_150--Hb_000365_280 Hb_004007_070 Hb_004007_070 Hb_003159_150--Hb_004007_070 Hb_000371_120 Hb_000371_120 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090 Hb_002893_030--Hb_004007_070 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_001353_020 Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_002119_040 Hb_002119_040 Hb_002000_090--Hb_002119_040 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_000094_120 Hb_000094_120 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_002027_030 Hb_002027_030 Hb_005539_260--Hb_002027_030 Hb_005539_260--Hb_000554_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410367 12.42 4.84978 26.1316 0.0206935 0.122602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.477534 0.613022 9.79781 3.26026 3.04161

CAGE analysis