Hb_000028_510

Information

Type -
Description -
Location Contig28: 504512-534067
Sequence    

Annotation

kegg
ID rcu:RCOM_0582680
description ATP binding protein, putative (EC:2.7.12.1)
nr
ID XP_012080600.1
description PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
swissprot
ID Q54BC9
description Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1
trembl
ID A0A067K3R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15560 PE=4 SV=1
Gene Ontology
ID GO:0004712
description kinase domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29235: 504522-523828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_510 0.0 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
2 Hb_002022_070 0.0686914343 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_003929_140 0.0711974137 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001021_200 0.0721637769 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
5 Hb_002267_140 0.0758378871 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
6 Hb_004629_010 0.0783448452 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
7 Hb_002615_090 0.0791810288 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
8 Hb_008695_110 0.0797206149 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
9 Hb_001301_130 0.079839597 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
10 Hb_000230_090 0.0800934242 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
11 Hb_002235_300 0.0803278889 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
12 Hb_006615_120 0.0817838182 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
13 Hb_000120_660 0.082560708 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_001322_130 0.0834324436 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
15 Hb_008253_030 0.0835642513 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
16 Hb_009112_010 0.08440873 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
17 Hb_028872_170 0.0845616722 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032920_130 0.0848348663 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
19 Hb_138596_010 0.0853015045 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
20 Hb_002253_080 0.0856269426 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000028_510 Hb_000028_510 Hb_002022_070 Hb_002022_070 Hb_000028_510--Hb_002022_070 Hb_003929_140 Hb_003929_140 Hb_000028_510--Hb_003929_140 Hb_001021_200 Hb_001021_200 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_004629_010 Hb_004629_010 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_003929_140--Hb_002022_070 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_001231_030 Hb_001231_030 Hb_003929_140--Hb_001231_030 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470 Hb_008253_030 Hb_008253_030 Hb_002267_140--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002267_140--Hb_001767_140 Hb_138596_010 Hb_138596_010 Hb_002267_140--Hb_138596_010 Hb_002276_240 Hb_002276_240 Hb_002267_140--Hb_002276_240 Hb_002253_080 Hb_002253_080 Hb_002267_140--Hb_002253_080 Hb_002843_120 Hb_002843_120 Hb_002267_140--Hb_002843_120 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_004629_010--Hb_005104_010 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_002615_090--Hb_001767_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4065 18.5879 13.4491 9.65452 16.7339 15.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13437 5.33119 11.6035 7.48843 11.965

CAGE analysis