Hb_000028_580

Information

Type -
Description -
Location Contig28: 584399-589913
Sequence    

Annotation

kegg
ID rcu:RCOM_0582120
description glutamate decarboxylase, putative (EC:4.1.1.15)
nr
ID XP_012075033.1
description PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
swissprot
ID P54767
description Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067KGW3
description Glutamate decarboxylase OS=Jatropha curcas GN=JCGZ_10928 PE=3 SV=1
Gene Ontology
ID GO:0009506
description glutamate decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29240: 569391-589698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_580 0.0 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
2 Hb_000028_550 0.1084477553 - - unknown [Medicago truncatula]
3 Hb_002097_080 0.1188488807 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
4 Hb_004449_090 0.1345101121 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
5 Hb_000479_060 0.1519653308 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
6 Hb_154038_040 0.1527553225 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_135720_010 0.1531827885 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
8 Hb_002203_020 0.1540765375 - - conserved hypothetical protein [Ricinus communis]
9 Hb_098795_030 0.1569378044 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
10 Hb_160405_010 0.15773208 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_014361_040 0.1592046229 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_186495_010 0.1593381063 - - Phosphoprotein phosphatase [Theobroma cacao]
13 Hb_001117_180 0.160545338 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_001439_250 0.1605630531 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
15 Hb_001728_130 0.1630348836 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_003001_130 0.1652551383 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001976_020 0.1659929814 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004117_020 0.1660143485 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005056_120 0.1673057533 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000109_190 0.1674593035 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_580 Hb_000028_580 Hb_000028_550 Hb_000028_550 Hb_000028_580--Hb_000028_550 Hb_002097_080 Hb_002097_080 Hb_000028_580--Hb_002097_080 Hb_004449_090 Hb_004449_090 Hb_000028_580--Hb_004449_090 Hb_000479_060 Hb_000479_060 Hb_000028_580--Hb_000479_060 Hb_154038_040 Hb_154038_040 Hb_000028_580--Hb_154038_040 Hb_135720_010 Hb_135720_010 Hb_000028_580--Hb_135720_010 Hb_000028_550--Hb_154038_040 Hb_004117_020 Hb_004117_020 Hb_000028_550--Hb_004117_020 Hb_002768_040 Hb_002768_040 Hb_000028_550--Hb_002768_040 Hb_022693_090 Hb_022693_090 Hb_000028_550--Hb_022693_090 Hb_001117_180 Hb_001117_180 Hb_000028_550--Hb_001117_180 Hb_002685_220 Hb_002685_220 Hb_002097_080--Hb_002685_220 Hb_001976_020 Hb_001976_020 Hb_002097_080--Hb_001976_020 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_098795_030 Hb_098795_030 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_030565_050 Hb_030565_050 Hb_004449_090--Hb_030565_050 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_011828_010 Hb_011828_010 Hb_004449_090--Hb_011828_010 Hb_000365_280 Hb_000365_280 Hb_000479_060--Hb_000365_280 Hb_000109_190 Hb_000109_190 Hb_000479_060--Hb_000109_190 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_154038_040--Hb_001117_180 Hb_000384_020 Hb_000384_020 Hb_154038_040--Hb_000384_020 Hb_001688_030 Hb_001688_030 Hb_154038_040--Hb_001688_030 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_001728_130 Hb_001728_130 Hb_135720_010--Hb_001728_130 Hb_007625_030 Hb_007625_030 Hb_135720_010--Hb_007625_030 Hb_029866_080 Hb_029866_080 Hb_135720_010--Hb_029866_080 Hb_032260_130 Hb_032260_130 Hb_135720_010--Hb_032260_130 Hb_000325_010 Hb_000325_010 Hb_135720_010--Hb_000325_010 Hb_139461_010 Hb_139461_010 Hb_135720_010--Hb_139461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.693364 9.02419 3.6916 25.3516 0.726245 0.756948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.696251 0.638981 0.113434 5.23747 6.94198

CAGE analysis