Hb_000028_610

Information

Type -
Description -
Location Contig28: 606045-612594
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13320g
description POPTRDRAFT_779775; hypothetical protein
nr
ID XP_012084980.1
description PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
swissprot
ID B3NU20
description Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila erecta GN=GG18702 PE=3 SV=1
trembl
ID B9IN14
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13320g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29246: 607273-609745 , PASA_asmbl_29247: 610443-611998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_610 0.0 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
2 Hb_005662_030 0.0720921347 - - protein with unknown function [Ricinus communis]
3 Hb_003641_050 0.0872240941 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
4 Hb_000367_010 0.0880144923 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
5 Hb_007026_030 0.092040891 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
6 Hb_002893_150 0.0921516344 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
7 Hb_000207_310 0.0926084696 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
8 Hb_009646_030 0.0941135361 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001599_030 0.095051183 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
10 Hb_135377_010 0.0955521572 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
11 Hb_001936_060 0.0957497119 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
12 Hb_001235_200 0.0958139449 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022693_120 0.0974796456 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
14 Hb_003728_080 0.0986593009 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
15 Hb_001444_010 0.0994467922 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
16 Hb_152079_010 0.0999109896 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
17 Hb_006065_020 0.100842779 - - -
18 Hb_000797_050 0.1009764109 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
19 Hb_000214_040 0.1016659615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009265_080 0.1027320756 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_610 Hb_000028_610 Hb_005662_030 Hb_005662_030 Hb_000028_610--Hb_005662_030 Hb_003641_050 Hb_003641_050 Hb_000028_610--Hb_003641_050 Hb_000367_010 Hb_000367_010 Hb_000028_610--Hb_000367_010 Hb_007026_030 Hb_007026_030 Hb_000028_610--Hb_007026_030 Hb_002893_150 Hb_002893_150 Hb_000028_610--Hb_002893_150 Hb_000207_310 Hb_000207_310 Hb_000028_610--Hb_000207_310 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_000922_330 Hb_000922_330 Hb_003641_050--Hb_000922_330 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_007477_080 Hb_007477_080 Hb_003641_050--Hb_007477_080 Hb_001100_050 Hb_001100_050 Hb_003641_050--Hb_001100_050 Hb_000983_150 Hb_000983_150 Hb_000367_010--Hb_000983_150 Hb_007904_160 Hb_007904_160 Hb_000367_010--Hb_007904_160 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_023480_010 Hb_023480_010 Hb_000367_010--Hb_023480_010 Hb_000700_140 Hb_000700_140 Hb_000367_010--Hb_000700_140 Hb_001617_060 Hb_001617_060 Hb_000367_010--Hb_001617_060 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_000531_090 Hb_000531_090 Hb_002893_150--Hb_000531_090 Hb_000789_080 Hb_000789_080 Hb_002893_150--Hb_000789_080 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.27901 1.86504 2.50175 2.52815 4.7137 6.00515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92399 2.96281 3.58976 3.08338 2.41577

CAGE analysis