Hb_000028_620

Information

Type -
Description -
Location Contig28: 606207-606888
Sequence    

Annotation

kegg
ID rcu:RCOM_0582960
description hypothetical protein
nr
ID XP_002527694.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNX5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0582960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29245: 606166-606911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_620 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009615_030 0.1233472948 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000552_060 0.1345566095 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
4 Hb_002580_020 0.1357047755 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
5 Hb_081191_010 0.1452925038 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
6 Hb_000749_160 0.1505559726 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_002097_180 0.1534265664 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
8 Hb_003177_100 0.1589493432 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
9 Hb_001616_100 0.1594113127 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
10 Hb_002601_040 0.1635468103 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
11 Hb_002400_480 0.1688964918 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
12 Hb_000015_190 0.1701824882 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
13 Hb_001863_520 0.1705955014 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004397_010 0.1761714412 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_002818_170 0.1764168846 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
16 Hb_001195_670 0.1775412763 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
17 Hb_004357_030 0.1786448733 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_003811_050 0.1796784849 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
19 Hb_000429_030 0.1803197626 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_110631_010 0.1823492721 - - hypothetical protein JCGZ_04359 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_620 Hb_000028_620 Hb_009615_030 Hb_009615_030 Hb_000028_620--Hb_009615_030 Hb_000552_060 Hb_000552_060 Hb_000028_620--Hb_000552_060 Hb_002580_020 Hb_002580_020 Hb_000028_620--Hb_002580_020 Hb_081191_010 Hb_081191_010 Hb_000028_620--Hb_081191_010 Hb_000749_160 Hb_000749_160 Hb_000028_620--Hb_000749_160 Hb_002097_180 Hb_002097_180 Hb_000028_620--Hb_002097_180 Hb_009615_030--Hb_002580_020 Hb_009615_030--Hb_081191_010 Hb_003177_100 Hb_003177_100 Hb_009615_030--Hb_003177_100 Hb_009615_030--Hb_000749_160 Hb_009615_030--Hb_002097_180 Hb_000429_030 Hb_000429_030 Hb_009615_030--Hb_000429_030 Hb_000552_060--Hb_009615_030 Hb_000552_060--Hb_002580_020 Hb_002400_480 Hb_002400_480 Hb_000552_060--Hb_002400_480 Hb_000552_060--Hb_000749_160 Hb_002601_040 Hb_002601_040 Hb_000552_060--Hb_002601_040 Hb_002580_020--Hb_081191_010 Hb_003811_050 Hb_003811_050 Hb_002580_020--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_002580_020--Hb_000676_130 Hb_006834_010 Hb_006834_010 Hb_002580_020--Hb_006834_010 Hb_000853_010 Hb_000853_010 Hb_002580_020--Hb_000853_010 Hb_081191_010--Hb_003811_050 Hb_081191_010--Hb_000429_030 Hb_081191_010--Hb_003177_100 Hb_002413_030 Hb_002413_030 Hb_081191_010--Hb_002413_030 Hb_003964_060 Hb_003964_060 Hb_000749_160--Hb_003964_060 Hb_000676_170 Hb_000676_170 Hb_000749_160--Hb_000676_170 Hb_008727_040 Hb_008727_040 Hb_000749_160--Hb_008727_040 Hb_005144_080 Hb_005144_080 Hb_000749_160--Hb_005144_080 Hb_000749_160--Hb_002580_020 Hb_002818_170 Hb_002818_170 Hb_002097_180--Hb_002818_170 Hb_002025_380 Hb_002025_380 Hb_002097_180--Hb_002025_380 Hb_003189_010 Hb_003189_010 Hb_002097_180--Hb_003189_010 Hb_006501_100 Hb_006501_100 Hb_002097_180--Hb_006501_100 Hb_006277_030 Hb_006277_030 Hb_002097_180--Hb_006277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.523269 2.46281 13.9697 59.7131 0.0767784 0.206593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97347 0.281829 0.229292 29.7148 2.77377

CAGE analysis