Hb_000028_630

Information

Type -
Description -
Location Contig28: 613314-613907
Sequence    

Annotation

kegg
ID sbi:SORBI_04g001087
description SORBIDRAFT_04g001087, Sb04g001087; hypothetical protein
nr
ID AIF28540.1
description PIN-like protein, partial [Selaginella apoda]
swissprot
ID -
description -
trembl
ID A0A075ILB2
description PIN-like protein (Fragment) OS=Selaginella apoda PE=2 SV=1
Gene Ontology
ID GO:0000323
description auxin efflux carrier component 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_630 0.0 - - PIN-like protein, partial [Selaginella apoda]
2 Hb_000094_390 0.1923654289 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
3 Hb_001691_050 0.1966659238 - - -
4 Hb_002234_220 0.200886873 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
5 Hb_000733_040 0.2025234353 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
6 Hb_007634_020 0.2064365838 - - -
7 Hb_073212_010 0.2183426707 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
8 Hb_000605_010 0.2195984895 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
9 Hb_059436_010 0.2236556163 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_001892_160 0.2277802 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
11 Hb_000836_050 0.2280820373 - - -
12 Hb_002026_230 0.2323573639 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
13 Hb_004307_040 0.2336723743 - - -
14 Hb_000186_100 0.2348080055 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
15 Hb_000815_100 0.2349728171 - - -
16 Hb_000200_060 0.2353474445 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
17 Hb_000153_020 0.236106922 - - conserved hypothetical protein [Ricinus communis]
18 Hb_040506_010 0.2385853939 - - protein binding protein, putative [Ricinus communis]
19 Hb_011639_070 0.2405541489 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
20 Hb_002759_130 0.2428058585 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000028_630 Hb_000028_630 Hb_000094_390 Hb_000094_390 Hb_000028_630--Hb_000094_390 Hb_001691_050 Hb_001691_050 Hb_000028_630--Hb_001691_050 Hb_002234_220 Hb_002234_220 Hb_000028_630--Hb_002234_220 Hb_000733_040 Hb_000733_040 Hb_000028_630--Hb_000733_040 Hb_007634_020 Hb_007634_020 Hb_000028_630--Hb_007634_020 Hb_073212_010 Hb_073212_010 Hb_000028_630--Hb_073212_010 Hb_001178_120 Hb_001178_120 Hb_000094_390--Hb_001178_120 Hb_000153_020 Hb_000153_020 Hb_000094_390--Hb_000153_020 Hb_001892_160 Hb_001892_160 Hb_000094_390--Hb_001892_160 Hb_158990_010 Hb_158990_010 Hb_000094_390--Hb_158990_010 Hb_005539_320 Hb_005539_320 Hb_000094_390--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_000094_390--Hb_177627_010 Hb_001691_050--Hb_073212_010 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_088542_010 Hb_088542_010 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_001691_050--Hb_007634_020 Hb_002232_290 Hb_002232_290 Hb_001691_050--Hb_002232_290 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_001741_100 Hb_001741_100 Hb_002234_220--Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_002234_220--Hb_002217_130 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_000200_060 Hb_000200_060 Hb_002234_220--Hb_000200_060 Hb_002234_220--Hb_073212_010 Hb_129067_010 Hb_129067_010 Hb_000733_040--Hb_129067_010 Hb_000733_040--Hb_088542_010 Hb_089140_060 Hb_089140_060 Hb_000733_040--Hb_089140_060 Hb_000733_040--Hb_073212_010 Hb_040506_010 Hb_040506_010 Hb_000733_040--Hb_040506_010 Hb_000733_040--Hb_001691_050 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_007634_020--Hb_001892_160 Hb_073212_010--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_073212_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_073212_010--Hb_012384_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.79373 0.224674 0.946214 0.0970481 4.01222 3.14526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.16111 0.562709 0.0661105 0

CAGE analysis