Hb_000028_640

Information

Type -
Description -
Location Contig28: 613934-626811
Sequence    

Annotation

kegg
ID rcu:RCOM_0583560
description Auxin efflux carrier component, putative
nr
ID XP_002527704.1
description Auxin efflux carrier component, putative [Ricinus communis]
swissprot
ID Q9LU77
description Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2
trembl
ID B9SNY5
description Auxin efflux carrier component, putative (Fragment) OS=Ricinus communis GN=RCOM_0583560 PE=4 SV=1
Gene Ontology
ID GO:0000323
description auxin efflux carrier component 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_640 0.0 - - Auxin efflux carrier component, putative [Ricinus communis]
2 Hb_009913_020 0.2152776378 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000258_020 0.2189361245 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
4 Hb_005460_030 0.2556184574 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
5 Hb_002217_130 0.2648886266 - - galactinol synthase-1 [Manihot esculenta]
6 Hb_000161_100 0.2672891038 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
7 Hb_001019_120 0.2716170355 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
8 Hb_007933_020 0.2742142239 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
9 Hb_000115_070 0.2789891058 - - hypothetical protein RCOM_0030010 [Ricinus communis]
10 Hb_002234_220 0.2847697522 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
11 Hb_000005_320 0.2876436511 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008406_130 0.2911521345 - - -
13 Hb_031073_010 0.2926369742 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
14 Hb_000252_090 0.2943353576 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
15 Hb_030627_040 0.3001021341 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
16 Hb_002124_020 0.3013025381 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
17 Hb_002637_020 0.3026226041 - - -
18 Hb_004128_120 0.3034122926 - - hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
19 Hb_001741_100 0.3036878149 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
20 Hb_013124_010 0.3040239705 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_640 Hb_000028_640 Hb_009913_020 Hb_009913_020 Hb_000028_640--Hb_009913_020 Hb_000258_020 Hb_000258_020 Hb_000028_640--Hb_000258_020 Hb_005460_030 Hb_005460_030 Hb_000028_640--Hb_005460_030 Hb_002217_130 Hb_002217_130 Hb_000028_640--Hb_002217_130 Hb_000161_100 Hb_000161_100 Hb_000028_640--Hb_000161_100 Hb_001019_120 Hb_001019_120 Hb_000028_640--Hb_001019_120 Hb_000005_320 Hb_000005_320 Hb_009913_020--Hb_000005_320 Hb_009913_020--Hb_005460_030 Hb_006960_030 Hb_006960_030 Hb_009913_020--Hb_006960_030 Hb_000252_090 Hb_000252_090 Hb_009913_020--Hb_000252_090 Hb_003216_120 Hb_003216_120 Hb_009913_020--Hb_003216_120 Hb_001916_120 Hb_001916_120 Hb_000258_020--Hb_001916_120 Hb_000927_040 Hb_000927_040 Hb_000258_020--Hb_000927_040 Hb_002234_220 Hb_002234_220 Hb_000258_020--Hb_002234_220 Hb_001277_410 Hb_001277_410 Hb_000258_020--Hb_001277_410 Hb_001138_010 Hb_001138_010 Hb_000258_020--Hb_001138_010 Hb_004143_070 Hb_004143_070 Hb_005460_030--Hb_004143_070 Hb_000181_310 Hb_000181_310 Hb_005460_030--Hb_000181_310 Hb_002159_030 Hb_002159_030 Hb_005460_030--Hb_002159_030 Hb_030627_040 Hb_030627_040 Hb_005460_030--Hb_030627_040 Hb_004324_240 Hb_004324_240 Hb_005460_030--Hb_004324_240 Hb_005460_030--Hb_003216_120 Hb_001741_100 Hb_001741_100 Hb_002217_130--Hb_001741_100 Hb_002217_130--Hb_002234_220 Hb_001892_160 Hb_001892_160 Hb_002217_130--Hb_001892_160 Hb_002217_130--Hb_000161_100 Hb_000007_310 Hb_000007_310 Hb_002217_130--Hb_000007_310 Hb_000200_060 Hb_000200_060 Hb_002217_130--Hb_000200_060 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_036702_010 Hb_036702_010 Hb_001019_120--Hb_036702_010 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_001019_120--Hb_002159_030 Hb_001019_120--Hb_004324_240 Hb_007933_020 Hb_007933_020 Hb_001019_120--Hb_007933_020 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276136 0 0.042293 0.0193156 0.256464 0.164887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0206656 0 0 0.0129291 0.137768

CAGE analysis