Hb_000029_020

Information

Type -
Description -
Location Contig29: 57059-59782
Sequence    

Annotation

kegg
ID rcu:RCOM_1282000
description Vesicle-associated membrane protein, putative
nr
ID XP_002523836.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9FMR5
description Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1
trembl
ID B9SCW7
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1282000 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 714

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30334: 57118-61642 , PASA_asmbl_30335: 15522-61642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_020 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_001811_020 0.0638455114 - - conserved hypothetical protein [Ricinus communis]
3 Hb_183086_060 0.0736492135 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
4 Hb_000602_010 0.0767607963 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
5 Hb_002687_110 0.0784922897 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_000115_330 0.0792480232 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
7 Hb_004109_190 0.0801328855 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
8 Hb_002835_410 0.0839073875 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
9 Hb_000099_200 0.0908025014 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000200_050 0.0932088545 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001158_140 0.096442473 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
12 Hb_000482_090 0.0981225194 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
13 Hb_010436_060 0.1018264808 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
14 Hb_009486_130 0.1026400976 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
15 Hb_000115_060 0.103255166 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
16 Hb_004976_030 0.1036542899 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
17 Hb_000205_270 0.1039155149 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
18 Hb_002449_020 0.1059390495 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
19 Hb_000617_260 0.1059589476 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
20 Hb_000041_050 0.1072561884 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000029_020 Hb_000029_020 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_000099_200 Hb_000099_200 Hb_001811_020--Hb_000099_200 Hb_000205_270 Hb_000205_270 Hb_001811_020--Hb_000205_270 Hb_001811_020--Hb_000115_330 Hb_001258_080 Hb_001258_080 Hb_001811_020--Hb_001258_080 Hb_001811_020--Hb_183086_060 Hb_183086_060--Hb_004109_190 Hb_004724_420 Hb_004724_420 Hb_183086_060--Hb_004724_420 Hb_183086_060--Hb_002687_110 Hb_001248_130 Hb_001248_130 Hb_183086_060--Hb_001248_130 Hb_183086_060--Hb_000205_270 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000482_090 Hb_000482_090 Hb_000602_010--Hb_000482_090 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_009486_130 Hb_009486_130 Hb_000115_330--Hb_009486_130 Hb_002477_070 Hb_002477_070 Hb_000115_330--Hb_002477_070 Hb_000115_330--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000115_330--Hb_016065_010 Hb_004109_190--Hb_002687_110 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5532 3.20147 2.89604 9.75819 18.6521 22.2522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3566 19.4534 31.1086 11.9432 6.84282

CAGE analysis