Hb_000029_030

Information

Type -
Description -
Location Contig29: 64530-69581
Sequence    

Annotation

kegg
ID rcu:RCOM_1282020
description hypothetical protein
nr
ID XP_012070158.1
description PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
swissprot
ID Q93YN4
description Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana GN=ELM1 PE=1 SV=1
trembl
ID A0A067L6X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04189 PE=4 SV=1
Gene Ontology
ID GO:0000266
description mitochondrial fission protein elm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30337: 64584-66518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_030 0.0 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
2 Hb_002368_050 0.0693768531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006693_030 0.0720779062 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
4 Hb_001776_110 0.0736800752 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
5 Hb_000975_290 0.0759548386 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
6 Hb_001454_210 0.0800598811 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
7 Hb_011224_080 0.0800850826 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
8 Hb_004223_130 0.0823371721 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005062_070 0.0824469723 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
10 Hb_007919_050 0.0828311052 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
11 Hb_002686_270 0.0830080894 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000025_200 0.0830254302 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
13 Hb_004662_030 0.0831012711 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
14 Hb_001439_120 0.0841389059 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008066_010 0.0847983609 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
16 Hb_002498_100 0.0855810227 - - bcr-associated protein, bap, putative [Ricinus communis]
17 Hb_002681_110 0.0861694906 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
18 Hb_007908_020 0.0879829414 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000110_160 0.0885525957 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000017_120 0.0889369201 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_030 Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080 Hb_002368_050--Hb_006693_030 Hb_000956_010 Hb_000956_010 Hb_002368_050--Hb_000956_010 Hb_000025_200 Hb_000025_200 Hb_002368_050--Hb_000025_200 Hb_002368_050--Hb_011224_080 Hb_007908_020 Hb_007908_020 Hb_002368_050--Hb_007908_020 Hb_006693_030--Hb_000956_010 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_006693_030--Hb_011224_080 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_003540_040 Hb_003540_040 Hb_001776_110--Hb_003540_040 Hb_006569_020 Hb_006569_020 Hb_001776_110--Hb_006569_020 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_001776_110--Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_001776_110--Hb_002097_110 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_071736_020 Hb_071736_020 Hb_000975_290--Hb_071736_020 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_001454_210--Hb_028872_140 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89452 1.38775 1.43953 2.58246 7.87555 8.7409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4097 7.15525 10.417 2.81682 1.91593

CAGE analysis