Hb_000029_130

Information

Type -
Description -
Location Contig29: 127412-137969
Sequence    

Annotation

kegg
ID rcu:RCOM_1282210
description DNA helicase, putative
nr
ID XP_012068094.1
description PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FMR9
description RuvB-like protein 1 OS=Arabidopsis thaliana GN=RIN1 PE=1 SV=1
trembl
ID A0A067KZC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15939 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ruvb-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30353: 127407-133011 , PASA_asmbl_30354: 133490-137745 , PASA_asmbl_30355: 134116-137137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_130 0.0 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
2 Hb_010381_060 0.0545219069 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
3 Hb_000207_310 0.0635182129 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
4 Hb_000913_050 0.0647457251 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
5 Hb_003464_020 0.0724949747 - - srpk, putative [Ricinus communis]
6 Hb_002890_020 0.07261892 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
7 Hb_009627_010 0.0754175079 - - Protein dom-3, putative [Ricinus communis]
8 Hb_001444_010 0.076121807 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
9 Hb_001235_200 0.0774616906 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001936_060 0.0778086145 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
11 Hb_001289_080 0.0783988526 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_033834_060 0.0792172773 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
13 Hb_000498_010 0.0793961708 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_020719_030 0.0811651309 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
15 Hb_023386_040 0.0817454145 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
16 Hb_002044_060 0.0834964159 - - elongation factor ts, putative [Ricinus communis]
17 Hb_000300_440 0.0836148423 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
18 Hb_004370_030 0.0836754324 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
19 Hb_012098_110 0.0837444807 - - Ribonuclease 3 [Gossypium arboreum]
20 Hb_026099_010 0.0841761957 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_130 Hb_000029_130 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_000207_310 Hb_000207_310 Hb_000029_130--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000029_130--Hb_000913_050 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_002890_020 Hb_002890_020 Hb_000029_130--Hb_002890_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_000207_310--Hb_002890_020 Hb_000207_310--Hb_000913_050 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_000913_050--Hb_001828_160 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_003464_020--Hb_000023_190 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7498 7.10924 8.57823 5.74267 18.5476 19.6581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.929 8.84053 8.10114 12.8568 8.71844

CAGE analysis