Hb_000029_140

Information

Type -
Description -
Location Contig29: 154795-156377
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11060g
description POPTRDRAFT_737925; GDP-4-keto-6-deoxy-D-mannose-3 family protein
nr
ID XP_011018085.1
description PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
swissprot
ID Q9LMU0
description Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=1 SV=1
trembl
ID B9IM89
description GDP-4-keto-6-deoxy-D-mannose-3 family protein OS=Populus trichocarpa GN=POPTR_0018s11060g PE=3 SV=1
Gene Ontology
ID GO:0050577
description gdp-l-fucose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30356: 154832-156886 , PASA_asmbl_30357: 156632-156803
cDNA
(Sanger)
(ID:Location)		 010_B09.ab1: 155770-156866 , 025_D11.ab1: 155527-156866

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_140 0.0 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
2 Hb_149985_010 0.0678923151 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
3 Hb_011218_090 0.0716770295 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
4 Hb_000120_080 0.0725219725 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
5 Hb_000012_310 0.0740135701 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
6 Hb_003058_120 0.0782920339 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
7 Hb_005634_010 0.0785326301 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000917_230 0.0787465838 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
9 Hb_004157_050 0.0809933979 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
10 Hb_007218_120 0.0811075523 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
11 Hb_000352_310 0.0829874866 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
12 Hb_001818_100 0.0830908676 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_002471_090 0.0849007987 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
14 Hb_000574_450 0.0853749039 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
15 Hb_000521_240 0.0866375898 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
16 Hb_010515_020 0.0869935373 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
17 Hb_023001_040 0.0876239446 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
18 Hb_005396_150 0.0878752888 - - protein binding protein, putative [Ricinus communis]
19 Hb_000580_120 0.0879870678 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
20 Hb_000359_060 0.0887974137 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000029_140 Hb_000029_140 Hb_149985_010 Hb_149985_010 Hb_000029_140--Hb_149985_010 Hb_011218_090 Hb_011218_090 Hb_000029_140--Hb_011218_090 Hb_000120_080 Hb_000120_080 Hb_000029_140--Hb_000120_080 Hb_000012_310 Hb_000012_310 Hb_000029_140--Hb_000012_310 Hb_003058_120 Hb_003058_120 Hb_000029_140--Hb_003058_120 Hb_005634_010 Hb_005634_010 Hb_000029_140--Hb_005634_010 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_011218_090--Hb_149985_010 Hb_000580_120 Hb_000580_120 Hb_000120_080--Hb_000580_120 Hb_000352_310 Hb_000352_310 Hb_000120_080--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000120_080--Hb_000189_550 Hb_010863_010 Hb_010863_010 Hb_000120_080--Hb_010863_010 Hb_000011_060 Hb_000011_060 Hb_000120_080--Hb_000011_060 Hb_008748_030 Hb_008748_030 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_003058_120--Hb_004157_050 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_000140_290 Hb_000140_290 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0227 19.4963 19.0586 33.8569 10.4325 13.2145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2114 21.9023 26.3287 29.6143 29.4718

CAGE analysis